GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-17 16:15:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rangifer tarandus platyrhyncus genome assembly, chromosome: 22.
OX596106.1:29956097-29956116
AGGCAGTAAAACCTAAACATTAAGTCCTAA29956097GGTTTGGGGTTAGTGAGGGTCCAGCTGTTATGAATACAATAGTCCTGGAA
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:14636165-14636184
GTGTTAGTGAGGAAAAGGAAAGCGATTTTA14636165GGTTTGGGGTTAGTGAGGGTGGATAAATGGTTGGTGATGTGGGTGGTGGT
Trifolium dubium genome assembly, chromosome: 9.
OX638070.1:9061608-9061627
GTGTTGGTGAGAAAGAGGAAAGCGATTTTG9061608GGTTTGGGGTTAGTGAGGGTGGAAAAGTGGGAGGTGGTGTGGGTGGTGGT
Bos mutus isolate yakQH1 chromosome 9.
CP027077.1:32757333-32757352
TTCGAGGACTGTTGTATTCATAACATCTCG32757333ACCCTCACTAACCCCAAACCTTAGGACTTAATGTTTAGGTTTTACTGCCT
Bos mutus isolate yakQH1 chromosome 9.
CP027077.1:32757407-32757426
CTGCCTTAAAATGTCCACAGTGGATGAATG32757407ACCCTCACTAACCCCAAACCTTAGGACTTAAAGTTTAGGTATTACTGCCT
Bos taurus genome assembly, chromosome: 9.
LR962767.1:32798751-32798770
TTCGAGGACTGTTGTATTCATAACATCTCG32798751ACCCTCACTAACCCCAAACCTTAGGACTTAAAGTTTAGGTTTTACTGCCT
Bos taurus genome assembly, chromosome: 9.
LR962892.1:32831680-32831699
TTCGAGGACTGTTGTATTCATAACATCTCG32831680ACCCTCACTAACCCCAAACCTTAGGACTTAAAGTTTAGGTTTTACTGCCT
Cervus elaphus genome assembly, chromosome: 28.
OU343105.1:34983402-34983421
TTCCAGGACTATTGTATTCATAACAGCTGG34983402ACCCTCACTAACCCCAAACCTTAGGACTTAATGTTTAGGTTTTACTGCCT
Bos gaurus x Bos taurus genome assembly, chromosome: 9.
OX258963.1:37358379-37358398
TTCGAGGACTGTTGTATTCATAACATCTCG37358379ACCCTCACTAACCCCAAACCTTAGGACTTAAAGTTTAGGTTTTACTGCCT
Bos taurus strain mammals genome assembly, chromosome: 9.
OX344698.1:38174871-38174890
TTCGAGGACTGTTGTATTCATAACATCTCG38174871ACCCTCACTAACCCCAAACCTTAGGACTTAAAGTTTAGGTTTTACTGCCT
Rangifer tarandus platyrhyncus genome assembly, chromosome: 22.
OX459958.2:32376980-32376999
TTCCAGGACTATTGTATTCATAACAGCTGG32376980ACCCTCACTAACCCCAAACCTTAGGACTTAATGTTTAGGTTTTACTGCCT
Bos taurus genome assembly, chromosome: Bta09.
OY997237.1:36141903-36141922
TTCGAGGACTGTTGTATTCATAACATCTCG36141903ACCCTCACTAACCCCAAACCTTAGGACTTAAAGTTTAGGTTTTACTGCCT
Muntiacus reevesi genome assembly, chromosome: 19.
OZ005643.1:30788333-30788352
TTCCAGGACTATTGTATTCATAACAACTGG30788333ACCCTCACTAACCCCAAACCTTAGGACTTAATGTTTAGGTTTTACTGCCT
Trifolium repens mRNA, clone: WCC38l21_046, unspecified EST.
FY467644.1:187-206
ACCACCACCCACATCACCAACCATTTATCT187ACCCTCACTAACCCCAAACCTAAAATCGCTTTCCTTTTCCTCACTAACAC
Bos taurus clone CH240-361H15, WORKING DRAFT SEQUENCE, 24 unordered pieces.
AC220328.1:13812-13831
NNNNNNNNNNNNNNNNNTCATAACATCTCG13812ACCCTCACTAACCCCAAACCTTAGGACTAAAGTTTAGGTTTTACTGCCTT
Trifolium dubium genome assembly, chromosome: 7.
OX638068.1:35403809-35403828
TTCCACCGCGCCACCACCATCCACTTATCC35403809ACCCTCACTAACCCCAAACCCAAAATCGCTTTCCTCTTCCTCACCAACTC
Haemonchus contortus, ISE/inbred ISE, WGS project CAVP01000000 data, chromosome: 1.
LS997562.1:8556082-8556101
GGAAAAGAACTCGACACAGCCCATTGCTTT8556082ACCCTCACTAACCCCAAACCGGGTAGAAAACAGAATTGTGTAGGCGTCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTTTGGGGTTAGTGAGGGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTTTGGGGTTAGTGAGGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTTGGGGTTAGTGAGGGT&k=0&no_gap=0&offset=0&limit=50
0.233 | 0.140 | search_minus_done; http://172.18.8.135:50400/match?q=ACCCTCACTAACCCCAAACC&k=0&no_gap=0&offset=0&limit=47
0.243 | 0.009 | cgi_end;

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