GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 12:56:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:4814666-4814685
GAATTCTGTGAACCAATGGAAAAATGACAC4814666GTAAAGAAGACCCATATGCCCAACACTATCTAAGCATCAGCCTCATATTA
Brassica rapa beta-carotene hydroxylase gene, complete cds.
DQ156907.1:911-930
GAATTCTGTGAACCAATGGAAAAATGACAC911GTAAAGAAGACCCATATGCCCAACACTATCTAAGCATCAGCCTCATATTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB077I08, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC241067.1:70947-70966
TAATATGAGGCTGATGCTTAGATAGTGTTG70947GGCATATGGGTCTTCTTTACGTGTCATTTTTCCATTGGTTCACAGAATTC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:27041458-27041477
TAATATGAGGCTGATGCTTAGATAGTGTTG27041458GGCATATGGGTCTTCTTTACGTGTCATTTTTCCATTGGTTCACAGAATTC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:27060386-27060405
TAATATGAGGCTGATGCTTAGATAGTGTTG27060386GGCATATGGGTCTTCTTTACGTGTCATTTTTCCATTGGTTCACAGAATTC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:50853337-50853356
TAATATGAGGCTGATGCTTAGATAGTGTTG50853337GGCATATGGGTCTTCTTTACGTGTCATTTTTCCATTGGTTCACAGAATTC
Brassica rapa genome, scaffold: A03.
LR031572.1:26937787-26937806
TAATATGAGGCTGATGCTTAGATAGTGTTG26937787GGCATATGGGTCTTCTTTACGTGTCATTTTTCCATTGGTTCACAGAATTC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:27065017-27065036
TAATATGAGGCTGATGCTTAGATAGTGTTG27065017GGCATATGGGTCTTCTTTACGTGTCATTTTTCCATTGGTTCACAGAATTC
Dolichopus griseipennis genome assembly, chromosome: 2.
OY720442.1:72054801-72054820
CCTTGAAATAAATGTAGAAGCTTCAAATTT72054801GGCATATGGGTCTTCTTTACTAATTCCTGCGTGTCCCTCTAATTTTGTAC
Dolichopus griseipennis genome assembly, chromosome: 2.
OY720442.1:72066748-72066767
CCTTGAAATAAATGTAGAAGCTTCAAATTT72066748GGCATATGGGTCTTCTTTACTAATTCCTGCGTGTCCCTCTAATTTTGTAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTAAAGAAGACCCATATGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTAAAGAAGACCCATATGCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=GTAAAGAAGACCCATATGCC&k=0&no_gap=0&offset=0&limit=50
0.144 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=GGCATATGGGTCTTCTTTAC&k=0&no_gap=0&offset=0&limit=48
0.149 | 0.005 | cgi_end;

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