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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:12:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis clone KBrB017P03, complete sequence.
CU915246.1:64851-64874
GTGAGAGATTAGATGAATTGTTGGAGAAAT64851GTAACTTGGTACAGAACAGCATAGCTGAGAAGCTCTGCATTTACTTTTGAAAGG
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:43290678-43290701
GCGAGAGATTAAATGAACTGTTGGAGAAAT43290678GTAACTTGGTACAGAACAGCATAGCAGAGAAGCTCTGCATTTACTTTTGAACTT
Brassica napus genome assembly, chromosome: A05.
HG994359.1:39388530-39388553
GCGAGAGATTAAATGAACTGTTGGAGAAAT39388530GTAACTTGGTACAGAACAGCATAGCAGAGAAGCTCTGCATTTACTTTTGAACTT
Brassica rapa genome, scaffold: A05.
LR031570.1:44992704-44992727
GCGAGAGATTAAATGAACTGTTGGAGAAAT44992704GTAACTTGGTACAGAACAGCATAGCAGAGAAGCTCTGCATTTACTTTTGAACTT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:52219649-52219672
GTGAGAGATTAAATGAATTGTTGGAGAAAT52219649GTAACTTGGTACAGAACAGCATAGCCGAGAAGCTCTGCATTTACTTTTGAACTT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:41670160-41670183
GCGAGAGATTAAATGAACTGTTGGAGAAAT41670160GTAACTTGGTACAGAACAGCATAGCAGAGAAGCTCTGCATTTACTTTTGAACTT
OL8222F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8222, mRNA sequence.
EH427613.1:129-152
AAGTTCAAAAGTAAATGCAGAGCTTCTCGG129CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAATTCATTTAATCTCTCAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14943.
FX691799.1:139-162
CCTTTCAAAAGTAAATGCAGAGCTTCTCAG139CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAATTCATCTAATCTCTCAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_13626.
FX691811.1:134-157
AAGTTCAAAAGTAAATGCAGAGCTTCTCTG134CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAGTTCATTTAATCTCTCGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_46524.
FX734952.1:111-134
CCTTTCAAAAGTAAATGCAGAGCTTCTCAG111CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAATTCATCTAATCTCTCAC
oej68e10.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ029179.1:111-134
AAGTTCAAAAGTAAATGCAGAGCTTCTCGG111CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAATTCATTTAATCTCTCAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013F17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC232553.1:82361-82384
CCTTTCAAAAGTAAATGCAGAGCTTCTCAG82361CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAATTCATCTAATCTCTCAC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:15985756-15985779
ACTTTCAAAAGTAAATGCAGAGCTTCTCAG15985756CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAATTCATCTAATCTCTCAC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:15866028-15866051
ACTTTCAAAAGTAAATGCAGAGCTTCTCAG15866028CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAATTCATCTAATCTCTCAC
Brassica rapa genome, scaffold: A03.
LR031572.1:15668789-15668812
ACTTTCAAAAGTAAATGCAGAGCTTCTCAG15668789CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAATTCATCTAATCTCTCAC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:15794797-15794820
ACTTTCAAAAGTAAATGCAGAGCTTCTCAG15794797CTATGCTGTTCTGTACCAAGTTACATTTCTCCAACAATTCATCTAATCTCTCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTAACTTGGTACAGAACAGCATAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTAACTTGGTACAGAACAGCATAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.329 | 0.321 | search_plus_done; http://172.18.8.135:50400/match?q=GTAACTTGGTACAGAACAGCATAG&k=0&no_gap=0&offset=0&limit=50
0.479 | 0.150 | search_minus_done; http://172.18.8.135:50400/match?q=CTATGCTGTTCTGTACCAAGTTAC&k=0&no_gap=0&offset=0&limit=44
0.486 | 0.007 | cgi_end;

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