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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_8924.
FX658893.1:1080-1099
GTTGTAGATGTTGAAGTAGATATTGAAAAG1080GTACCAAAGCGCAAACAACAAGCCAAGCTCGAGGATCTTACTCAGCTTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8416.
FX747930.1:522-541
GTTGTAGATGTTGAAGTAGATATTGAAAAG522GTACCAAAGCGCAAACAACAAGCCAAGCTCGAGGATCTTACTCAGCTTTC
SIL-029P16TR Sisymbrium irio BAC library SIL Sisymbrium irio genomic clone SIL-029P16, genomic survey sequence.
JJ767124.1:39-58
ATTGTAGATGTTGAAGTAGATATTGAAAAG39GTACCAAAGCGCAAACAACAAACCAAGCTCAAGCATCTTGGTAAGTTTAC
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:15244220-15244239
GTTGTAGATGTTGAAGTAGATATTGAAAAG15244220GTACCAAAGCGCAAACAACAAGCCAAGCTCGAGGATCTTACTCAGCTTTC
Calendula officinalis genome assembly, chromosome: 2.
OY970821.1:97587489-97587508
ATTATAGATGTTGAAATATATATTAAAAAT97587489GTACCAAAGCGCAAACAACAATCCAAGCATCACCGTCTCGGCCATTTTCG
Calendula officinalis genome assembly, chromosome: 12.
OY970831.1:19738422-19738441
ATTATAGATGTTGAAATATATATTGAAAAT19738422GTACCAAAGCGCAAACAACAATCCAAGCATCACCGTCTCGGCCATTTTCG
RR1BU84TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX746965.1:394-413
GAAAGCTGATTAAGATCCTCGAGCTTGGCT394TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACATCAACATCTACAAC
RS1BL55TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX886744.1:432-451
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT432TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
RS2D947TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY937551.1:453-472
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT453TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
RS3EZ44TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD578272.1:385-404
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT385TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATC
Raphanus sativus mRNA, clone: RSCF20P19, 5' end sequence.
FY433157.1:265-284
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT265TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
Raphanus sativus mRNA, clone: RSCL02O04, 5' end sequence.
FY433797.1:416-435
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT416TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
Raphanus sativus mRNA, clone: RSCR06H22, 5' end sequence.
FY441642.1:239-258
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT239TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
Raphanus sativus mRNA, clone: RSCS01M08, 5' end sequence.
FY446473.1:435-454
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT435TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
Raphanus sativus mRNA, clone: RSCS14A07, 5' end sequence.
FY450732.1:419-438
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT419TGTTGTTTGCGCTTTGGTACCTTTTCATATCTACTTCACATCTTCTACAA
Raphanus sativus mRNA, clone: RSCS16I18, 5' end sequence.
FY451628.1:404-423
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT404TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
Raphanus sativus mRNA, clone: RSCS24A16, 5' end sequence.
FY454323.1:416-435
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT416TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
0278641 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO926635.1:337-356
GAAAGCTGACTAAGATCCTGGAGCTCGGCT337TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
0278741 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO926660.1:403-422
GAAAGCTGACTAAGATCCTGGAGCTCGGCT403TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
TSA: Raphanus sativus RS01991 mRNA sequence.
JT786538.1:318-337
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT318TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:13650062-13650081
GAAAGCTGAGTAAGATCCTCGAGCTTGGCT13650062TGTTGTTTGCGCTTTGGTACCTTTTCAATATCTACTTCAACATCTACAAC
Cardamine chenopodiifolia genome assembly, chromosome: 7.
OZ000465.1:15953608-15953627
GAAAATTAACGAAGATACTTGAACTTGGCT15953608TGTTGTTTGCGCTTTGGTACCTTTTTAATATCTACTTCAACATCTACAAT
Horisme vitalbata genome assembly, chromosome: 6.
OX638094.1:23073852-23073871
TCACTTTCAACTCCTCAAACAAACTGTGTT23073852TGTTGTTTGCGCTTTGGTACGCTCAGCGGAACAACTACAACCATAAATGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTACCAAAGCGCAAACAACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTACCAAAGCGCAAACAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.227 | 0.218 | search_plus_done; http://172.18.8.135:50400/match?q=GTACCAAAGCGCAAACAACA&k=0&no_gap=0&offset=0&limit=50
1.902 | 1.676 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTGTTTGCGCTTTGGTAC&k=0&no_gap=0&offset=0&limit=44
1.913 | 0.011 | cgi_end;

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