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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:46:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:3332584-3332603
TAAGAGATATGGGAATGAGCGTCTCCATCC3332584GTACCATGTCGGGTGGAAACGACACCGTATCCGGGTCTTCACCGGAAATC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:3408400-3408419
CGAAAGATTTGGGGAAGAGCATCTCCATCC3408400GTACCATGTCGGGTGGAAACGACACCGTATCCAAGTCTTCACCACTGATC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:3383617-3383636
GATGAGCGAGAGATTTGAGCGTCTCCATCC3383617GTACCATGTCGGGTGGAAACGACACCGTATTCGGGTCATCACTGTCGATA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:3321093-3321112
GATAAGTGAGAGATTTAAGCGTCTCCATCC3321093GTACCATGTCGGGTGGAAACGACACCGTATCCGGGTCTTTACCTCTGATT
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38462889-38462908
TGAGAGATTTGGGGAATAACGTCTCCATCC38462889GTACCATGTCGGGTGGAAACGACACCGTATCCGGATCTTTTCCAATGATG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38547208-38547227
GAAAAGCGAGAGATTTGAGCGTCTCCATCC38547208GTACCATGTCGGGTGGAAACGACACCGTATCCGGGTCTTCACTGTCGATA
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38561839-38561858
TGAGAGATGTGGGGAAGAGCGTCTCCATCC38561839GTACCATGTCGGGTGGAAACGACACCGTATCCGGGTCTTTACCACCGATT
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38640889-38640908
GATGAGCGAGAGATTTGAGCGTCTCCATCC38640889GTACCATGTCGGGTGGAAACGACACCGTATCCGGGTCTTCACCACTGATC
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:8432791-8432810
TGAGAGATTTGGGGAAAAGCGTCTCCGTCC8432791GTACCATGTCGGGTGGAAACGACACCGTAACCCGATCTTCAACATTGATT
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25550967-25550986
TGAGAGATTTGGGGAAGAGCGTCTCCATCA25550967GTACCATGTCGGGTGGAAACGACACCGTATCCGGGTCTTCACCACTTATC
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25596945-25596964
TGAGAGATTTGGGGAAGAGCGTCTCCATCC25596945GTACCATGTCGGGTGGAAACGACACCGTATCCGGGTCTTCTTCACCATCG
Electrona antarctica genome assembly, chromosome: 24.
OX578269.1:4130788-4130807
TTTTCATTTCAACAGTTTTGGACATACGAG4130788GTTTCCACCCGACATGGTACGATCGCACAAAGACAACAGGGATTATCTTA
Sequence 2 from Patent EP2227485.
HI569002.1:6579-6598
AATCGGTGGTGAAGACCCGGATACGGTGTC6579GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Sequence 3 from Patent EP2227485.
HI569003.1:3792-3811
AATCGGTGGTGAAGACCCGGATACGGTGTC3792GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Sequence 2 from patent US 9512442.
KH426299.1:6579-6598
AATCGGTGGTGAAGACCCGGATACGGTGTC6579GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Sequence 3 from patent US 9512442.
KH426300.1:3792-3811
AATCGGTGGTGAAGACCCGGATACGGTGTC3792GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Sequence 4 from patent US 9512442.
KH426301.1:5220-5239
AATCGGTGGTGAAGACCCGGATACGGTGTC5220GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Mdlv3_4027a11.y1 Mdlv3 Malus domestica cDNA clone Mdlv3_4027a11 5' similar to TR:Q9ZSN6 Q9ZSN6 DISEASE RESISTANCE PROTEIN RPP1-WSA, mRNA sequence.
CV627980.1:423-442
AATCCGTAGTACAGACCCGGATACGGTGTC423GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Mdfrg3155P14.g1 Apple_EST_Mdfrg Malus domestica cDNA 5', mRNA sequence.
GO523854.1:336-355
GATCAATGGAAAAGATCCGGATATGGTGTC336GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Mdltb7524F20.g1 Apple_EST_Mdltb Malus domestica cDNA 5' similar to gb|AAO15846.1| resistance protein KR4 [Glycine max], mRNA sequence.
GO531255.1:121-140
AATCCTTAGTACAGACCCGGATACGGTGTC121GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
TSA: Pyrus communis mRNA, contig: lc17098.
FX625653.1:57-76
CATAAGTGGTGAAGACCCGGATACGGTGTC57GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2506235-2506254
TATCGACAGTGAAGACCCGGATACGGTGTC2506235GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTTTTC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2593530-2593549
TATCGACAGTGAAGACCCGGATACGGTGTC2593530GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2622250-2622269
GATCAACGGTGAAGACCCGGATACGGTGTC2622250GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2668623-2668642
CATCGATGGAAAAGATCCGGATATGGTGTC2668623GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCGCC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2459858-2459877
GATCAATGGAAAAGATCTAGATACGGTGTC2459858GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2526923-2526942
TATCGACAGTGAAGACCCGGATACGGTGTC2526923GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2582674-2582693
TATCAATAGTGAAGACCCGGATACGGTGTC2582674GTTTCCACCCGACATGGTACGGATGGAGACGTTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2686229-2686248
TATCGACAGTGAAGACCCGGATACGGTGTC2686229GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2711943-2711962
AATCCGTAGTACAGACCCGGATACGGTGTC2711943GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2550837-2550856
GATCAATGGAAAAGATCTAGATACGGTGTC2550837GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2617152-2617171
TATCGACAGTGAAGACCCGGATACGGTGTC2617152GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2648865-2648884
GATCAGTGGTGAAGACCCGGATACGGTGTC2648865GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2665159-2665178
TATCGACAGTGAAGACCCGGATACGGTGTC2665159GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTTTTC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2491321-2491340
AATCGGTGGTAAAGACCCGGATACGGTGTC2491321GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCACATCTCTCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2503366-2503385
AATCCGTAGTACAGACCCGGATACGGTGTC2503366GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2546969-2546988
AATCCGTAGTACAGACCCGGATACGGTGTC2546969GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2575887-2575906
GATCAATGGAAAAGATCCGGATATGGTGTC2575887GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2686084-2686103
TATCGACAGTGAAGACCCGGATACGGTGTC2686084GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2732638-2732657
AATCCGTAGTACAGACCCGGATACGGTGTC2732638GTTTCCACCCGACATGGTACGGATGGAGACGTTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2553062-2553081
AATCGGTGGTAAAGACCTGGATACGGTGTC2553062GTTTCCACCCGACATGGTACGGATGGAGACCCTCTTCCCGAAATCTCTCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2565251-2565270
TATTGACAGTGATGACCCGAATACGGTGTC2565251GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2588395-2588414
CCGTGGTGGTAAAGACTCGGATACGGTGTC2588395GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2658166-2658185
AATCCATAGTACAGACCTGGATACAGTGTC2658166GTTTCCACCCGACATGGTACGGATGGAGACACTCAAATCTCTCGCTCATC
Malus domestica Starking Delicious DNA, BAC clone SD-178_L15, complete sequence.
LC360748.1:55202-55221
AATCCGTAGTACAGACCCGGATACGGTGTC55202GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica Starking Delicious DNA, BAC clone SD-241_O01, complete sequence.
LC360749.1:14923-14942
AATCCGTAGTACAGACCCGGATACGGTGTC14923GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica EZF 01 RPP13L1 mRNA for RPP13-like protein 1, complete cds.
LC738865.1:3906-3925
AATCCGTAGTACAGACCCGGATACGGTGTC3906GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica EZF12 RPP13 mRNA for putative disease resistance RPP13-like protein 1, complete cds.
LC754130.1:3906-3925
AATCCGTAGTACAGACCCGGATACGGTGTC3906GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2644257-2644276
AATCCGTAGTACAGACCCGGATACGGTGTC2644257GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2674788-2674807
GATCAGTGGTGAAGACCCGGATACGGTGTC2674788GTTTCCACCCGACATGGTACATATGGAGACGTTCTTCCCCAAATCTCTCA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2823591-2823610
AATCCGTAGTACAGACCCGGATACGGTGTC2823591GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2636905-2636924
AATCCGTAGTACAGACCCGGATACGGTGTC2636905GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2666000-2666019
GATCAATGGAAAAGATCCGGATATGGTGTC2666000GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2792137-2792156
TATCGACAGTGAAGACCCGGATACGGTGTC2792137GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2838108-2838127
AATCCGTAGTACAGACCCGGATACGGTGTC2838108GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2655486-2655505
AATCGGTGGTAAAGACCCGGATACGGTGTC2655486GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCACATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2670118-2670137
TATCGACAGTGAAGACCCGGATACGGTGTC2670118GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2719929-2719948
AATCCGTAGTACAGACCCGGATACGGTGTC2719929GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2748860-2748879
GATCAATGGAAAAGATCCGGATATGGTGTC2748860GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2859048-2859067
TATCGACAGTGAAGACCCGGATACGGTGTC2859048GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2905602-2905621
AATCCGTAGTACAGACCCGGATACGGTGTC2905602GTTTCCACCCGACATGGTACGGATGGAGACGTTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2695438-2695457
AATCGGTGGTAAAGACCCGGATACGGTGTC2695438GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCACATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2710070-2710089
TATCGACAGTGAAGACCCGGATACGGTGTC2710070GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2759880-2759899
AATCCGTAGTACAGACCCGGATACGGTGTC2759880GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2788812-2788831
GATCAATGGAAAAGATCCGGATATGGTGTC2788812GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2899005-2899024
TATCGACAGTGAAGACCCGGATACGGTGTC2899005GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2945559-2945578
AATCCGTAGTACAGACCCGGATACGGTGTC2945559GTTTCCACCCGACATGGTACGGATGGAGACGTTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2693844-2693863
CATTAATGGAAAAGATCCGGATACGGTGTC2693844GTTTCCACCCGACATGGTACGGATGGAGATGCTCTTCCCCAAATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2726184-2726203
AATCGGTGGTAAAGACCCGGATACGGTGTC2726184GTTTCCACCCGACATGGTACGGATGGAGACGCTCTTCCCCACATCTCTCA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2740432-2740451
GATTTCCGGTGAAGACCCGGATACGGTGTC2740432GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTTGTC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2816087-2816106
AATCCATAGTACAGACCCGGATACAGTGTC2816087GTTTCCACCCGACATGGTACGGATGGAGACATTCAAATCTCTCGCTCGTC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:37861798-37861817
TATCGACAGTGATGACCCGAATACGGTGTC37861798GTTTCCACCCGACATGGTACGGATGGAGACGCTCAAATCTCTCGCTCATC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:37888013-37888032
GATCAATGGAAAAGATCCGGATACGGTGTC37888013GTTTCCACCCGACATGGTACGGATGGAGACGCTTAAATCTCTCACTTATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTACCATGTCGGGTGGAAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTACCATGTCGGGTGGAAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.180 | 0.171 | search_plus_done; http://172.18.8.135:50400/match?q=GTACCATGTCGGGTGGAAAC&k=0&no_gap=0&offset=0&limit=50
0.797 | 0.617 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTCCACCCGACATGGTAC&k=0&no_gap=0&offset=0&limit=39
0.836 | 0.039 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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