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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:13:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Camellia sinensis mRNA, clone: RT29A08, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS950535.1:39-59
TTTTTTTTTTTTTTTTTTAAGAAAGAAATC39GTAGCAAAAGAATTCATAATCAGAATCAACAATACAATACAAATAATCAAA
Camellia sinensis mRNA, clone: RT5E01, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS951556.1:43-63
TTTTTTTTTTGAGATTATAAGAAAGAAATC43GTAGCAAAAGAATTCATAATCAGAATCAACAATACAATACAAATAATCAAA
TSA: Camellia sinensis Singletons95718.Casi mRNA sequence.
HP772693.1:63-83
GAAAAGCCATGAGATTATAAGAAAGAAATC63GTAGCAAAAGAATTCATAATCAGAATCAACAATACAATACAAATAATCAAA
Sisyra nigra genome assembly, chromosome: 2.
OY292314.1:17083064-17083084
TTATTTCTGATTATTTCCAAGGAACTACGA17083064GTAGCAAAAGAATTCATAATCTCAACAAAGTTTTGAGAAATCCCATTACAA
Philonthus spinipes genome assembly, chromosome: 2.
OY720300.1:10313470-10313490
TTAGGCACAGAGTAAACATTACAGAATGAA10313470GTAGCAAAAGAATTCATAATCTGCTATATGTTATATTATAATGTATGTTAT
Psittacula echo genome assembly, chromosome: 11.
OY725431.1:16427251-16427271
ACTGTGTTTTCTCCTATTTTAAGATCAAGA16427251GATTATGAATTCTTTTGCTACGGCTCCTAAAATTCCTAATGTCTCCTCTAT
TL012C10 Young leaf cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA clone TL012C10 5', mRNA sequence.
CV014026.1:303-323
TTTGATTATTTGTATTGTATTGTTGATTCT303GATTATGAATTCTTTTGCTACGATTTCTTTCCCAAAAAAAAAAAAAAAAAA
Camellia sinensis mRNA, clone: LR19C03, 5' end sequence, expressed in lateral roots.
FS944744.1:713-733
TTTGATTATTTGTATTGTATTGTTGATTCT713GATTATGAATTCTTTTGCTACGATTTCTTTCTTATAAAAAAAAAAAAAAAA
EST2316 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_25_20.M13+_D03.ab1, mRNA sequence.
GE651989.1:760-780
TTTGATTATTTGTATTGTATTGTTGATTCT760GATTATGAATTCTTTTGCTACGATTTCTTTCTTATAATCTCATGGCTTTTC
EST2403 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_26_42.M13+_B06.ab1, mRNA sequence.
GE652076.1:742-762
TTTGATTATTTGTATTGTATTGTTGATTCT742GATTATGAATTCTTTTGCTAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTAGCAAAAGAATTCATAATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTAGCAAAAGAATTCATAATC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.251 | 0.243 | search_plus_done; http://172.18.8.135:50400/match?q=GTAGCAAAAGAATTCATAATC&k=0&no_gap=0&offset=0&limit=50
0.575 | 0.323 | search_minus_done; http://172.18.8.135:50400/match?q=GATTATGAATTCTTTTGCTAC&k=0&no_gap=0&offset=0&limit=45
0.578 | 0.003 | cgi_end;

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