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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:11:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:31581869-31581888
CAAGCAGTTCAAGAGGCATGCCTTATGTGT31581869GTAGCATCCATGCCTAAAACACGAAAACTAGTCTGCTTAGTACAAGCACC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:32998902-32998921
CAAGCAGTTCGAGAGGCCTGCCTTATGTGT32998902GTAGCATCCATGCCTAAAACACGAAAACTAGTCTGCTCAGTACAAGCACC
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:31012330-31012349
CAAGCAGTTCGAGAGGCCTACCTTATGTGT31012330GTAGCATCCATGCCTAAAACACGAAAACTAGTCTGCTCAGTACAAGCACC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:34713202-34713221
CAAGTAGTTCGAGAGGCCTGCCTTCTGTGT34713202GTAGCATCCATGCCTAAAACACAAAAACTAGTCTACTTAGTAGAAGTAGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:34724333-34724352
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT34724333GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:34749653-34749672
CAAGCAGTTCGAGAGGTCTGCCTTCTGTGT34749653GTAGCATCCATGCCTAAAACACGAAAACTAGTCTACTTAGGAGAAGTAGC
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:32455996-32456015
CAAGCAGTTCGAGAGGCCTGCCTTATGTGT32455996GTAGCATCCATGCCTAAAACACGAAAACTAGTATGCTCAGTACAAGCACC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:32005315-32005334
CAAGCAGTTTAAGAGGCCTGCCTTCTGTGT32005315GTAGCATCCATGCCTAAAACATGAAAACTAGTCTACTTAGCAAAAGTAGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:32015941-32015960
CAAGTAGTTCGAGAGGCCGGCCTTCTGTGT32015941GTAGCATCCATGCCTAAAACACAAAAACTAGTCTACTTAGTAGAAGTAGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:32041752-32041771
CAAGCAGTTCAAGAGGCCTGCCTTCTGTGT32041752GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGTAGAAGTAGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:32054753-32054772
CAAGCAATTCGAGAGGCCTGCCTTCTGTGT32054753GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:32101640-32101659
CAAGCAGTTCGAGAGGTCTGCCTTCTGTGT32101640GTAGCATCCATGCCTAAAACACGAAAACTAGTCTACTTAGGAGAAGTAGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:32122735-32122754
CAAGCAATTCGAGAGGCCTGCCTTCTGTGT32122735GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGC
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:29713843-29713862
CAAGCAGTTCGAGAGGCCTGCCTTATGTGT29713843GTAGCATCCATGCCTAAAACACGAAAACTAGTTTGCTCAGTACGAGTACC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:34534571-34534590
CAAGTAGTTCGAGAGGCCTGCCTTCTGTGT34534571GTAGCATCCATGCCTAAAACACAAAAACTAGTCTACTTAGTAGAAGTAGC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:34550352-34550371
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT34550352GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:34561450-34561469
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT34561450GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:34572548-34572567
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT34572548GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:34583436-34583455
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT34583436GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGT
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:34660657-34660676
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT34660657GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGT
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:34680859-34680878
CAAGCAGTTCGAGAGGTCTGCCTTCTGTGT34680859GTAGCATCCATGCCTAAAACACAAAAACTAGTCTACTTAGGAGAAGTAGC
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:32228163-32228182
CAAGCAGTTCGAGAGGCTTGCCTTATGTAT32228163GTAGCATCCATGCCTAAAACACAAAAACTAGTCTGCTCTGTACAAGCACC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:34114545-34114564
CAAGTAGTTCGAGAGGCCTGCCTTCTGTGT34114545GTAGCATCCATGCCTAAAACACAAAAACTAGTCTACTTAGTAGAAGTAGC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:34134552-34134571
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT34134552GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:34152953-34152972
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT34152953GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGT
Malus domestica genome assembly, chromosome: 5.
OU696681.1:34173342-34173361
CAAGCAGTTCGAGAGGTCTGCCTTCTGTGT34173342GTAGCATCCATGCCTAAAACACGAAAACTAGTCTACTTAGGAGAAGTAGC
Malus domestica genome assembly, chromosome: 10.
OU696686.1:32232022-32232041
CAAGCAGTTCGAGAGGCCTGCCTTATGTGT32232022GTAGCATCCATGCCTAAAACACGAAAACTAGTATGCTCAGTACAAGCACC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:33671537-33671556
CAATCAGTTTGAGAGGCATGTCTTCTGTGT33671537GTAGCATCCATGCCTAAAACATGAAAACAAGTCTACTTAGCAGAAGTAGT
Malus domestica genome assembly, chromosome: 5.
OU744546.1:33698310-33698329
CAATCAGTTTGAGAGGCATGTCTTTTGTGT33698310GTAGCATCCATGCCTAAAACATGAAAACAAGTCTACTTAGCAGAAGTAAC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:33737217-33737236
CAAGTAGTTCGAGAGGCCTGCCTTCTGTGT33737217GTAGCATCCATGCCTAAAACACAAAAACTAGTCTACTTAGTAGAAGTAGC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:33752585-33752604
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT33752585GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:33784383-33784402
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT33784383GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGT
Malus domestica genome assembly, chromosome: 5.
OU744546.1:33804551-33804570
CAAGCAGTTCGAGAGGTCTGCCTTCTGTGT33804551GTAGCATCCATGCCTAAAACACAAAAACTAGTCTACTTAGGAGAAGTAGC
Malus domestica genome assembly, chromosome: 10.
OU744551.1:32395624-32395643
CAAGCAGTTCGAGAGGCTTGCCTTATGTAT32395624GTAGCATCCATGCCTAAAACACGAAAACTAGTCTGCTCAGTACAAGCACC
Malus domestica genome assembly, chromosome: 5.
OU744957.1:34211952-34211971
CAAGTAGTTCGAGAGGCCTGCCTTCTGTGT34211952GTAGCATCCATGCCTAAAACACAAAAACTAGTCTACTTAGTAGAAGTAGC
Malus domestica genome assembly, chromosome: 5.
OU744957.1:34238901-34238920
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT34238901GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGT
Malus domestica genome assembly, chromosome: 5.
OU744957.1:34259286-34259305
CAAGCAGTTCGAGAGGTCTGCCTTCTGTGT34259286GTAGCATCCATGCCTAAAACACGAAAACTAGTCTACTTAGGAGAAGTAGC
Malus domestica genome assembly, chromosome: 10.
OU744962.1:33133965-33133984
CAAGCAGTTCGAGAGGCCTGCCTTATGTGT33133965GTAGCATCCATGCCTAAAACACGAAAACTAGTATGCTCAGTACAAGCACC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:35130042-35130061
CAATCAGTTTGAGAGGCATGTCTTCTGTGT35130042GTAGCATCCATGCCTAAAACATGAAAACAAGTCTACTTAGCAGAAGTAGT
Malus domestica genome assembly, chromosome: 5.
OU744995.1:35137628-35137647
CAATCAGTTTGAGAGGCATGTCTTTTGTGT35137628GTAGCATCCATGCCTAAAACATGAAAACAAGTCTACTTAGCAGAAGTAGC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:35181073-35181092
CAAGTAGTTCGAGAGGCCTGCCTTCTGTGT35181073GTAGCATCCATGCCTAAAACACAAAAACTAGTCTACTTAGTAGAAGTAGC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:35193439-35193458
CAAGCAGTTCGAGAGGCCTGCCTTCTGTGT35193439GTAGCATCCATGCCTAAAACACGAAAACTAGTGTACTTAGCAGAAGTAGT
Malus domestica genome assembly, chromosome: 5.
OU744995.1:35218811-35218830
CAAGCAGTTCGAGAGGTCTGCCTTCTGTGT35218811GTAGCATCCATGCCTAAAACACGAAAACTAGTCTACTTAGGAGAAGTAGC
Malus domestica genome assembly, chromosome: 10.
OU745000.1:32219676-32219695
CAAGCAGTTCGAGAGGCTTGCCTTATGTAT32219676GTAGCATCCATGCCTAAAACACGAAAACTAGTCTGCTCAGTACAAGCACC
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:30611459-30611478
CAAGCAGTTCGAGAGGCCTGCCTTATGTGT30611459GTAGCATCCATGCCTAAAACACGAAAACTAGTTTGCTCAGTACAAGCACC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:6375108-6375127
CAAGTAGTTCGAGAGGCCTGCCTTCTATGT6375108GTAGCATCCATGCCTAAAACACGAAAACTAGTCTACTTAGTAGAAGTAGT
Trichobilharzia regenti genome assembly, chromosome: 1.
OX235262.1:102438440-102438459
CAATGAACAAATAATTAAGATTGATTTTCA102438440GTAGCATCCATGCCTAAAACCACAGAATCTGCTCGTAACTCTACTTCACG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:11552979-11552998
GCTACTTCTCCTAAGTAGACTAGTTTTCGT11552979GTTTTAGGCATGGATGCTACACACAGAAGGCAGACCTCTCGAACTGCTTG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:11574095-11574114
ACTACTTCTGCTAAGTACACTAGTTTTCGT11574095GTTTTAGGCATGGATGCTACACACAGAAGGCAGGCCTCTCGAACTGCTTG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:11585653-11585672
GCTACTTCTACTAACTAGACTAGTTTTTGT11585653GTTTTAGGCATGGATGCTACACACAGAAGGCAGGCCTCTCGAACTACTTG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:11815938-11815957
GCTACTTCTCCTAAGTAGACTAGTTTTCGT11815938GTTTTAGGCATGGATGCTACACACAGAAGGCAGACCTCTCGAACTGCTTG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:11836323-11836342
ACTACTTCTGCTAAGTACACTAGTTTTCGT11836323GTTTTAGGCATGGATGCTACACACAGAAGGCAGGCCTCTCGAACTGCTTG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:11863272-11863291
GCTACTTCTACTAAGTAGACTAGTTTTTGT11863272GTTTTAGGCATGGATGCTACACACAGAAGGCAGGCCTCTCGAACTACTTG
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:12845572-12845591
GCTACTTCTGCTAAATAGACTAGTTTTTGT12845572GTTTTAGGCATGGATGCTACACAGAGAAGGCAGGCCTCTCAAACTGCTTG
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:12868756-12868775
GCTACTTCTGCTAAGTAGGCTAGTTTTCGT12868756GTTTTAGGCATGGATGCTACACACAGAAGGCCGGCCTCTCAAACTGCTTG
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:12936910-12936929
GCTACTTTTACTAAGTATACTAGTTTTTGT12936910GTTTTAGGCATGGATGCTACACACAGAAGGCAGGCCTCTCGAACTGCTTG
Trichobilharzia regenti genome assembly, chromosome: 1.
OX235262.1:102405202-102405221
CGTGAAGTAGAGTTACGAGCAGATTCTGTG102405202GTTTTAGGCATGGATGCTACTGAAAATCAATCTTAATTATTTGTTCATTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTAGCATCCATGCCTAAAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTAGCATCCATGCCTAAAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.183 | 0.174 | search_plus_done; http://172.18.8.135:50400/match?q=GTAGCATCCATGCCTAAAAC&k=0&no_gap=0&offset=0&limit=50
0.313 | 0.130 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTTAGGCATGGATGCTAC&k=0&no_gap=0&offset=0&limit=3
0.319 | 0.007 | cgi_end;

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