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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:43:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:53754372-53754391
CAAAGTCTCTGACGCCTGGGTTTCGATTAT53754372GTAGCCTTTGGTCTTCGTGTTCCCTGTGATGATCACGTTGTGAACGTGAA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:117251859-117251878
CAAAGCCTCTGACGCCTGGGTTTCGATTAT117251859GTAGCCTTTGGTCTTCGTGTTCCCTTTGATGATCACGTTGTGAACGTGAA
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:188872011-188872030
CAAAGCCTCTGACGCCTGGGTTTCGATTAT188872011GTAGCCTTTGGTCTTCGTGTTCCCTTTGATGATCACGTTGTGAACGTGAA
Hibiscus tridactylites genome assembly, chromosome: 9.
OY288273.1:97148841-97148860
CAAATCCTCCGATGCCTCGGCTCCGATTAT97148841GTAGCCTTTGGTCTTCGTGTTCCCTTTGACGATCACGTCGTGGACGTGGA
EST1071099 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT560459.1:309-328
TTCACGTTCACAACGTGATCATCAAAGGGA309ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
UFL_433_89 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES822932.1:320-339
TTCACGTTCACAACGTGATCATCAAAGGGA320ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
mhczaa0_028290.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_028290.z1, mRNA sequence.
JG837665.1:445-464
TTCACGTTCACAACGTGATCATCAAAGGGA445ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
mhczaa0_010358.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_010358.z1, mRNA sequence.
JG844774.1:450-469
TTCACGTTCACAACGTGATCATCAAAGGGA450ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
Gossypioides kirkii chromosome KI_01.
CP032244.1:5180050-5180069
TTCACGTTCACAACGTGATCATCAAAGGCA5180050ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:6534487-6534506
TTCACGTTCACAACGTGATCATCACAGGGA6534487ACACGAAGACCAAAGGCTACATAATCGAATCCCAGGCGTCAGAGGCTTTG
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:8404007-8404026
TTCACGTTCACAACGTGATCATCAAAGGGA8404007ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:8708130-8708149
TTCACGTTCACAACGTGATCATCAAAGGGA8708130ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
Hibiscus tridactylites genome assembly, chromosome: 4.
OY288268.1:3939406-3939425
TCCACGTCCACGATGTGATCGTCAAAGGGA3939406ACACGAAGACCAAAGGCTACATAATCGGAGCCGAGGCATCGGAGGATTTG
Cantharis rufa genome assembly, chromosome: 2.
OX376304.1:13759639-13759658
CAAGCTTACACATGAGTATAGAGCTAGCTT13759639ACACGAAGACCAAAGGCTACATACAAACGAAGCTAAATTATTGGCTATTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTAGCCTTTGGTCTTCGTGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTAGCCTTTGGTCTTCGTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.175 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=GTAGCCTTTGGTCTTCGTGT&k=0&no_gap=0&offset=0&limit=50
0.671 | 0.496 | search_minus_done; http://172.18.8.135:50400/match?q=ACACGAAGACCAAAGGCTAC&k=0&no_gap=0&offset=0&limit=46
0.678 | 0.007 | cgi_end;

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