GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:48:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

EX2PLCL1_UP_010_D02_17APR2003_005 Brassica napus EX2PLCL1 Brassica napus cDNA 5', mRNA sequence.
EE502702.1:161-180
CCACCGGGAATCGTTTTCTGAGTCTTTCTT161GTAGGGCTTCAAGTTCCTCTTTATCCTCTGGTATCTCAATTTTAGCCCAA
OL7966F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7966, mRNA sequence.
EH427082.1:262-281
CCACCGGGAATCGTTTTCTGAGTCTTTCTT262GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTCAATTTTAGCCCAA
0212606 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV146672.1:308-327
CCACCGGGAATCGTTTTCTGAGTCTTTCTT308GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTCAATTTTCGGACGC
0096082 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV152811.1:325-344
CCACCGGGAATCGTTTTCTGAGTCTTTCTT325GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTCAATTTTAGCCCAA
0096722 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV195570.1:401-420
CCACCGGGAATCGTTTTCTGAGTCTTTCTT401GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTCAATTTTAGCCCAA
0107473 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV225547.1:296-315
CCACCGGGAATCGTTTTCTGAGTCTTTCTT296GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTCAATTTTAGCCCAA
RS2DF66JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY934276.1:351-370
CCACCGGGAAGCGTTTTCTGAGTCTTTCTT351GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTCAATTTTAGCCCAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6942.
FX694573.1:319-338
CCACCGGGAATCTTTTTCTGAGTCTTTCTT319GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTCAATTTTAGCCCAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_25231.
FX730860.1:258-277
CCACCGGGAAGCGTTTTCTGAGTCTTTCTT258GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTCAATTTTAGCCCAA
TSA: Pachycladon cheesemanii 47422_406_2726_5_41.Pachleaf mRNA sequence.
JP980218.1:223-242
CCACTGGGAAACGTTTTCTGAGTCTTGCTT223GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTCAATTTTAGCCCAA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:12498508-12498527
CCACCGGGAATCGTTTTCTGAGTCTTTCTT12498508GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTGCTTACATAAAACA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:11101705-11101724
CCACCGGGAATCGTTTTCTGAGTCTTTCTT11101705GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTGCTTACATAAAACA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:55128981-55129000
CCACCGGGAATCGTTTTCTGAGTCTTTCTT55128981GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTGCTTACATAAAACA
Brassica rapa genome, scaffold: A06.
LR031569.1:10927149-10927168
CCACCGGGAATCTTTTTCTGAGTCTTTCTT10927149GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTGCTTACATAATACA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:55788849-55788868
CCACCGGGAATCGTTTTCTGAGTCTTTCTT55788849GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTGCTTACATAAAACA
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:11775127-11775146
CCACCGGGAATCTTTTTCTGAGTCTTTCTT11775127GTAGGGCTTCAAGTTCCTCTTTATCCTTTGGTATCTGCTTACATAATACA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:28263116-28263135
ATTTTGTCAAAAAACGAGTTCCAACATCTT28263116GTAGGGCTTCAAGTTCCTCTTTATCCTTCGGTGTCTGATTACATAAAGAG
Agriotes lineatus genome assembly, chromosome: 4.
OW679197.1:70469848-70469867
TTTTGCAGTTTCCACGACTTTCCATTTCCT70469848GTAGGGCTTCAAGTTCCTCTTGTTTTATTTCTGGTGGAGGCGCCACTATG
Echiichthys vipera genome assembly, chromosome: 7.
OY829652.1:14508422-14508441
ATTATTAAAAATCATATAACAAATGATACA14508422AGAGGAACTTGAAGCCCTACGTCACAAACACTAACATAAATAATATTAAA
Sequence 1 from Patent WO9850558.
A83277.1:1702-1721
TTGGGCTAAAATTGAGATACCAAAGGATAA1702AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Sequence 12 from patent US 6469149.
AR241300.1:1702-1721
TTGGGCTAAAATTGAGATACCAAAGGATAA1702AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Sequence 4 from patent US 6630330.
AR405966.1:1714-1733
TTGGGCTAAAATTGAGATACCAAAGGATAA1714AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Sequence 4 from Patent WO0210425.
AX374951.1:1714-1733
TTGGGCTAAAATTGAGATACCAAAGGATAA1714AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Sequence 4 from Patent EP1498489.
CS017718.1:1714-1733
TTGGGCTAAAATTGAGATACCAAAGGATAA1714AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Sequence 4 from Patent EP1820863.
CS694163.1:1714-1733
TTGGGCTAAAATTGAGATACCAAAGGATAA1714AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
JP 2004504850-A/2: Ascorbic Acid Production from Yeasts.
DL070805.1:1714-1733
TTGGGCTAAAATTGAGATACCAAAGGATAA1714AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Sequence 4 from patent US 7579171.
GP549735.1:1714-1733
TTGGGCTAAAATTGAGATACCAAAGGATAA1714AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Brassica oleracea var. viridis mRNA, clone: KALE-028E21, 3' end sequence.
DK525986.1:470-489
TTGGGCTAAAATTGAGATACCAAAGGATAA470AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Brassica oleracea var. viridis mRNA, clone: KALE-109D06, 3' end sequence.
DK556892.1:443-462
TTGGGCTAAAATTGAGATACCAAAGGATAA443AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Brassica oleracea var. viridis mRNA, clone: KALE-119K11, 3' end sequence.
DK560871.1:476-495
TTGGGCTAAAATTGAGATACCAAAGGATAA476AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Brassica oleracea var. viridis mRNA, clone: KALE-137E21, 3' end sequence.
DK567614.1:442-461
TTGGGCTAAAATTGAGATACCAAAGGATAA442AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Brassica oleracea var. viridis mRNA, clone: KALE-153G06, 3' end sequence.
DK573770.1:448-467
TTGGGCTAAAATTGAGATACCAAAGGATAA448AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
46RDOAG_UP_027_F12_30DEC2004_086 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
EE532085.1:405-424
TTGGGCTAAAATTGAGATACCAAAGGATAA405AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
BNQA_UP_138_D04_10NOV2005_026 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE555417.1:10-29
AAAGGATAA10AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
OL7966R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7966, mRNA sequence.
EH427070.1:326-345
TTGGGCTAAAATTGAGATACCAAAGGATAA326AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
EST5452 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B255B101, mRNA sequence.
EL627944.1:372-391
TTGGGCTAAAATTGAGATACCAAAGGATAA372AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
24RDBNH_UP_165_D07_14DEC2006_057 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES921319.1:460-479
TTGGGCTAAAATTGAGATACCAAAGGATAA460AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
0212770 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV146836.1:61-80
GCGTCCGAAAATTGAGATACCAAAGGATAA61AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
RR1BF32TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV528956.1:474-493
TTGGGCTAAAATTGAGATACCAAAGGATAA474AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGCTTCCCGGTGG
HXZ_N_166_60-D08-M13F_20_D08_2.ab1 Salt-treated normalized and full-length cDNA library of Olimarabidopsis pumila (Stephan) Al-Shehbaz Olimarabidopsis pumila cDNA 5', mRNA sequence.
JZ945380.1:320-339
TTGGGCTAAAATTGAGATACCAAAAGATAA320AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGTTTCCCAGTTG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_31716.
FX683302.1:191-210
TTGGGCCAAAATTGAGATACCGAAGGATAA191AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCTGTGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_14286.
FX728106.1:1737-1756
TTGGGCTAAAATTGAGATACCAAAGGATAA1737AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAAAGATTCCCGGTGG
BOGBD17TR BOGB Brassica oleracea genomic clone BOGBD17, genomic survey sequence.
BH458714.1:328-347
TGTTTTATGTAAGCAGATACCAAAGGATAA328AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
qn15d08.b1 BoBuds01 Brassica oleracea genomic clone qn15d08 5', genomic survey sequence.
BH746042.1:436-455
TGTTTTATGTAAGCAGATACCAAAGGATAA436AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Brassica rapa subsp. chinensis L-galactono-1,4-lactone dehydrogenase-like (GLDH) mRNA, complete sequence; nuclear gene for mitochondrial product.
AY899298.4:1687-1706
TTGGGCTAAAATTGAGATACCAAAGGATAA1687AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 2.
CP094632.1:21215941-21215960
ATCTTTATTTAATCAGATACCAAAGGATAA21215941AGAGGAACTTGAAGCCCTACAAGCAAGACTCAGAAAACGTTTCCCAGTGG
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19511204-19511223
TGTTTTATGTAAGCAGATACCAAAGGATAA19511204AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG
Camelina sativa cultivar CO46 chromosome 4.
CP131553.1:19307686-19307705
ATCTTTATTTAATCAGATACCAAAGGATAA19307686AGAGGAACTTGAAGCCCTACAAGCAAGACTCAGAAAACATTTCCCAGTGG
Camelina sativa cultivar CO46 chromosome 6.
CP131555.1:15423357-15423376
ATCTTTATTTATTCAGATACCAAAGGATAA15423357AGAGGAACTTGAAGCCCTACAAGGAAGACTCAGAAAACGTTTCCCAGTGG
Camelina sativa cultivar CO46 chromosome 9.
CP131558.1:24618518-24618537
TCTTTTATTTAATCAGATACCAAAGGATAA24618518AGAGGAACTTGAAGCCCTACAAGCAAGACTCAGAAAACGTTTCCCAGTGG
Capsella bursa-pastoris isolate WGS_leaf chromosome 5.
CP144187.1:11944579-11944598
ATCTTTAATTAATCAGATACCAAAGGATAA11944579AGAGGAACTTGAAGCCCTACAAGCAAGATTGAGAAAACGTTTCCCAGTGG
Capsella bursa-pastoris isolate WGS_leaf chromosome 13.
CP144195.1:14701365-14701384
ATCTTTAATTAATCAGATACCAAAGGATAA14701365AGAGGAACTTGAAGCCCTACAAGCAAGATTGAGAAAACGTTTCCCAGTGG
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:15769834-15769853
CTCTTTATGTAATCAGACACCGAAGGATAA15769834AGAGGAACTTGAAGCCCTACAAGATGTTGGAACTCGTTTTTTGACAAAAT
Cardamine flexuosa genome assembly, chromosome: 5.
OY743218.1:17467872-17467891
TATTTTATTTATTCAGATACCAAAGGATAA17467872AGAGGAACTTGAAGCCCTACAAGCAAGACTCAGAAAACGTTTCCCAGTGG
Nasturtium officinale genome assembly, chromosome: 12.
OY978510.1:7846580-7846599
TGTTTTATTTATTCAGATACCAAAGGATAA7846580AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGTTTCCCAGTGG
Brassica oleracea mRNA for L-galactono-1,4-lactone dehydrogenase.
Z97060.1:1714-1733
TTGGGCTAAAATTGAGATACCAAAGGATAA1714AGAGGAACTTGAAGCCCTACAAGAAAGACTCAGAAAACGATTCCCGGTGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTAGGGCTTCAAGTTCCTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTAGGGCTTCAAGTTCCTCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.689 | 0.680 | search_plus_done; http://172.18.8.135:50400/match?q=GTAGGGCTTCAAGTTCCTCT&k=0&no_gap=0&offset=0&limit=50
1.709 | 1.021 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGGAACTTGAAGCCCTAC&k=0&no_gap=0&offset=0&limit=32
1.735 | 0.025 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).