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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:40:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

000502KSFA004906HT (KSFA) A. deliciosa small fruit 13d post pollination Actinidia deliciosa cDNA clone KSFAA00490, mRNA sequence.
FG397246.1:30-49
CGTCATTGGTGGGCCACACGGTGATGCAG30GTATCACCGGACGCAAAATCATCATCGATACTTATGGTGGTTGGGGAGCC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004A14, complete sequence.
AC189633.2:76284-76303
ACAAATTATCAAAACTAGAGGCAGTAGCCA76284GTATCACCGGACGCAAAATCCATCATAGCGAATGAATTCATCTCAAAATC
Pieris rapae genome assembly, chromosome: 23.
LR990605.1:1259173-1259192
CACTCCTCCGGTGTAAGTCACACCGGAGGA1259173GTATCACCGGACGCAAAATCAAAGTAAAGGCTTCTTATGCAATTTATGTT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:55701388-55701407
GATTTTGAGATGAATTCATTCGCTATGATG55701388GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTTG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:40693726-40693745
GATTTTGAGATGAATTCATTCGCTATGATG40693726GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTGT
Brassica rapa isolate C634 glabra 1 (GL1) gene, partial cds.
HQ162470.1:1527-1546
GATTTTGAGATGAATTCATTCGCTATGATG1527GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG
Brassica rapa subsp. rapa cultivar Tsuda MYB domain protein 0 (MYB0) mRNA, complete cds.
HQ292618.1:712-731
GATTTTGAGATGAATTCATTCGCTATGATG712GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTTG
Brassica rapa subsp. nipposinica GL1 mRNA for trichome differentiation protein GL1, complete cds, cultivar: Kyo-nishiki.
LC142718.1:638-657
GATTTTGAGATGAATTCATTCGCTATGATG638GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG
Brassica rapa subsp. nipposinica GL1 mRNA for trichome differentiation protein GL1, complete cds, cultivar: Kyo-mizore.
LC142719.1:638-657
GATTTTGAGATGAATTCATTCGCTATGATG638GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG
Brassica rapa CR Kyobare BrGL1 gene for GLABRA1, complete cds, allele: 1.
LC669916.1:1530-1549
GATTTTGAGATGAATTCATTCGCTATGATG1530GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG
Brassica rapa CR Kyobare BrGL1 gene for GLABRA1, complete cds, allele: 2.
LC669917.1:1549-1568
GATTTTGAGATGAATTCATTCGCTATGATG1549GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG
Brassica rapa Hanakazari BrGL1 pseudogene, GLABRA1.
LC669918.1:1536-1555
GATTTTGAGATGAATTCATTCGCTATGATG1536GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG
Brassica rapa genome, scaffold: A06.
LR031569.1:50815909-50815928
GATTTTGAGATGAATTCATTCGCTATGATG50815909GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTTG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:54433390-54433409
GATTTTGAGATGAATTCATTCGCTATGATG54433390GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTATCACCGGACGCAAAATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTATCACCGGACGCAAAATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.257 | 0.249 | search_plus_done; http://172.18.8.135:50400/match?q=GTATCACCGGACGCAAAATC&k=0&no_gap=0&offset=0&limit=50
0.382 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=GATTTTGCGTCCGGTGATAC&k=0&no_gap=0&offset=0&limit=47
0.389 | 0.007 | cgi_end;

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