GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:18:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:1135241-1135260
GTAATCGATGATATTAGGAGAAGGTAAATA1135241GTATGGTAAAGGTGACCTGCAACGATTGAATATGAAGGTGGTGAGGATTT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:1136520-1136539
GTAATCGATGATATTAGGAGAAGGTAAATA1136520GTATGGTAAAGGTGACCTGCAACGATTGAATATGAAGGTGGTGAGGATTT
Brassica rapa genome, scaffold: A03.
LR031572.1:1147630-1147649
GTAATCGATGATATTAGGAGAAGGTAAATA1147630GTATGGTAAAGGTGACCTGCAACGATTGAATATGAAGGTGGTGAGGATTT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:1148498-1148517
GTAATCGATGATATTAGGAGAAGGTAAATA1148498GTATGGTAAAGGTGACCTGCAACGATTGAATATGAAGGTGGTGAGGATTT
Schistosoma mansoni strain Puerto Rico genome assembly, chromosome: 1.
HE601624.3:60343683-60343702
GACTTAGCGTCTCCAGTTAGGGTGTGTCCA60343683GTATGGTAAAGGTGACCTGCATTAATATCGAAGACTTACAAAACCATTTA
Schistosoma rodhaini genome assembly, chromosome: 1.
OX103911.1:59041493-59041512
GACTTAGCGTCTCCAGTTAGGGTGTGTCCA59041493GTATGGTAAAGGTGACCTGCATTAATATCGAAGACTTACAAAACCATTTA
Pinctada fucata DNA, chromosome 5, nearly complete sequence, Alternate Pseudohaplotype.
AP027120.1:2397891-2397910
CGATTATCTGAGGACGACTGATTAACCACG2397891GCAGGTCACCTTTACCATACACACAGACATATCTTACCATCTTACCATGG
Schistosoma rodhaini genome assembly, chromosome: 1.
OX103911.1:59039029-59039048
TAAATGGTTTTGTAAGTCTTCGATATTAAT59039029GCAGGTCACCTTTACCATACTGGACACACCCTAACTGGAGACGCTAAGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTATGGTAAAGGTGACCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTATGGTAAAGGTGACCTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=GTATGGTAAAGGTGACCTGC&k=0&no_gap=0&offset=0&limit=50
0.147 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGGTCACCTTTACCATAC&k=0&no_gap=0&offset=0&limit=44
0.149 | 0.001 | cgi_end;

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