GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 04:08:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sciurus vulgaris genome assembly, chromosome: 8.
LR738618.1:36875641-36875657
GGGATGTCAGTGACTGTTTAAAGCTAAGAT36875641GTATTTGGCGTGATGAAGAAAAGCAGGTCATACAAAACAGGGAAGGC
Danio rerio genome assembly, chromosome: 1.
LR812038.1:31582492-31582508
TCTCAAATTGAAAAAGAGGCTTTAGGCTTA31582492GTATTTGGCGTGATGAAGTTCCATGATTACTTGTTTGGGAGACCTTT
Danio rerio genome assembly, chromosome: 2.
LR812039.1:11102123-11102139
TCTCAAATTGAAAAAGAGGCTTTAGGCTTA11102123GTATTTGGCGTGATGAAGTTCCATGATTACTTGTTTGGGAGACCTTT
Danio rerio genome assembly, chromosome: 1.
LR812594.1:29489618-29489634
TCTCAAATTGAAAAAGAGGCTTTAGGCTTA29489618GTATTTGGCGTGATGAAGTTCCATGATTACTTGTTTGGGAGACCTTT
Barbus barbus genome assembly, chromosome: 3.
OW387170.1:39889694-39889710
TCAAGTATGCATACTTTCATTGTTTATATC39889694GTATTTGGCGTGATGAACTTTCTGTGTATACATAGAATGTAAATACC
MAG: Sphingobacteriales bacterium isolate Fred_18-Q3-R57-64_BATAC.414 chromosome.
CP064984.1:2813201-2813217
TTCAAAATGCTTTATTAATTGACAACTCTG2813201GTATTTGGCGTGATGAAGAAAAACTAAGCAACCACTTAAAAGCAAAT
Maridesulfovibrio sp. isolate 6beb94cf-9426-4573-8ce2-a4cb058dd04d genome assembly, chromosome: 14.
OY781243.1:179500-179516
CACTTGCTCGTTCTGACTTCTCTGTTGTAG179500GTATTTGGCGTGATGAAATCCGCATCGACCAGGAAGCTGTAGCAGCA
sjs5-005_C04_sjs5-005C04-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.
CV689426.1:313-329
GTTTATCGGATAGTGCTTTTGAACGCCTAC313GTATTTGGCGTGATGAATTACACTGGTCAGTTGATC
Schistosoma japonicum SJCHGC02358 protein mRNA, complete cds.
AY815220.1:313-329
GTTTATCGGATAGTGCTTTTGAACGCCTAC313GTATTTGGCGTGATGAATTACACTGGTCAGTTGATCATTGTCCTGTT
Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-171C19.
CU207244.19:56946-56962
TCTCAAATTGAAAAAGAGGCTTTAGGCTTA56946GTATTTGGCGTGATGAAGTTCCATGATTACTTGTTTGGGAGACCTTT
Citrus reshni microsatellite DNA, locus mCrCIR02B11.
FR692358.1:110-126
TGTGGCTGTCCCCATGACCCTACGTATATA110GTATTTGGCGTGATGAAATTGCAAGGGCGCATGTTGTCAGAAATTTT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:3352994-3353010
AAATGAAAAGTATTAAAATATATTATTTTA3352994GTATTTGGCGTGATGAATTGTGTTAAAGTTTAAACCAAATTTAGTAT
Brassica rapa genome, scaffold: A07.
LR031574.1:3252665-3252681
AAATGAAAAGTATTAAAATATATTATTTTA3252665GTATTTGGCGTGATGAATTGTGTTAAAGTTTAAACCAAATTTAGTAT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:3295148-3295164
AAATGAAAAGTATTAAAATATATTATTTTA3295148GTATTTGGCGTGATGAATTGTGTTAAAGTTTAAACCAAATTTAGTAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX460046.1:141631885-141631901
TAACGGTTAGCTATAGTAGTAGTAGTAGTA141631885GTATTTGGCGTGATGAATTCACGGAGACACGATGATGGAGATCATGG
Pseudanabaena sp. ABRG5-3 DNA, complete genome.
AP017560.1:1842462-1842478
CAAGTAAATATTAGCTCCAGCCCTAAGCCC1842462GTATTTGGCGTGATGAATATTGGTTTAAGACCAACAGTTAATGGCGA
Halomonas meridiana Slthf1 DNA, complete genome.
AP022821.1:1487472-1487488
TTCACAACGCGGTGATTGTTGATAACACCG1487472GTATTTGGCGTGATGAAGCGGGTCTAGGCCAGCACCTTGAGTGTAAA
Halomonas meridiana Eplume2 DNA, complete genome.
AP022869.1:307731-307747
TTCACAACGCGGTGATTGTTGATAACACCG307731GTATTTGGCGTGATGAAGCGGGTCTAGGCCAGCACCTTGAGTGTAAA
Candidatus Planktophila sulfonica, complete genome.
CP016773.1:866825-866841
GGAATCAGAAGGATTCGAGTAACAGTCAAA866825GTATTTGGCGTGATGAATCCAGGGACTTTCATTGAACTTCAGCCACC
Oceanisphaera profunda strain SM1222 chromosome, complete genome.
CP021377.1:3092021-3092037
TTAACGATGCCTTAATCGTTGATAACACCG3092021GTATTTGGCGTGATGAAGACGGCCTAGGCCAACACCTGCAAGCCAAG
Herbaspirillum sp. meg3 chromosome, complete genome.
CP022736.1:3977894-3977910
GCGGCGGCGGTCAACACGTCGCGCATCGGT3977894GTATTTGGCGTGATGAAAGCGGCACCCGGCAGATGCAAGCCCATGGC
Janthinobacterium svalbardensis strain PAMC 27463 chromosome, complete genome.
CP023422.1:5187109-5187125
GCAGCTTTGGTCAGCGCATCGCGCAGCGGG5187109GTATTTGGCGTGATGAAGGCGGCGCCCGGCAAGTGCAGGCCCATCAC
Microbulbifer hydrolyticus strain IRE-31 chromosome, complete genome.
CP047491.1:2938834-2938850
ATGAAATTCGACATGTGCGGCGCCGCCAGT2938834GTATTTGGCGTGATGAACGCGCTGGTCGAAATGAATGCGCCCGTGAA
Lentisphaerae bacterium WC36 chromosome, complete genome.
CP085689.1:941017-941033
CATTAAAAAAAATATCTGTAAATGATGTTA941017GTATTTGGCGTGATGAAATAGCTGAAATCCCAGACTTTAAGAATAGT
Spirosoma sp. KNUC1025 plasmid unnamed2, complete sequence.
CP087141.1:138814-138830
GAACAGGTACAACGCCAGTTCGACACCAAC138814GTATTTGGCGTGATGAATGTGATTCGCGAAATTCTGCCAGACTTCCG
Rouxiella chamberiensis strain DSM 28324 chromosome, complete genome.
CP114058.1:325488-325504
TGGAAAAAAGGGGCAGTGACCGCATGAGCA325488GTATTTGGCGTGATGAAGATATCGAAGGTGCGGTGATTGGCGGCATC
Biston betularia genome assembly, chromosome: 5.
FR989867.1:2054249-2054265
TTTTCCTACGATATTTATTAACAATAATTA2054249GTATTTGGCGTGATGAAATAAACATACAGGAGGTATTGTACCTTGTC
Erannis defoliaria genome assembly, chromosome: 8.
FR990074.1:14781655-14781671
ATAAATTAACCGCATCAAAGTAAACGCGTC14781655GTATTTGGCGTGATGAAGTTCAAATGAAACCATTATTTTGCGGTTTG
Hedya salicella genome assembly, chromosome: Z.
FR990096.1:1022200-1022216
GTACCAGACATGGTTGAAATTCGTTTTGCC1022200GTATTTGGCGTGATGAAGCCACAATATTTTTCGTTTCAGTGACCTCC
Hedya salicella genome assembly, chromosome: 1.
FR990097.1:43899820-43899836
GTCCCAAAAAAATGTTGAAACACGTTTACC43899820GTATTTGGCGTGATGAAGTTAGAACGGCACATACAAACATACAAAGA
Hedya salicella genome assembly, chromosome: 5.
FR990101.1:12319810-12319826
AATGACCCTTTTATTTAATTTTTTGTTTAA12319810GTATTTGGCGTGATGAAGCCACGACACATACAAAAAAATATATTGTT
Hedya salicella genome assembly, chromosome: 11.
FR990107.1:8850468-8850484
CCCGTGTAACAAAAATAGTTGAAAGTTTAG8850468GTATTTGGCGTGATGAAGCCACAACGACACAATATACAAACATACAA
Hedya salicella genome assembly, chromosome: 15.
FR990111.1:15301170-15301186
TCTACCAGAAATAGTTGAAATCCTCTTAAC15301170GTATTTGGCGTGATGAAGCCACAACGACATGTACAAATTGTACAAAC
Dicrocoelium dendriticum genome assembly, scaffold: DDEL_scaffold0081529.
LK478675.1:650-666
ACATGGGTGCAAAATTCCGACAGAGAATAA650GTATTTGGCGTGATGAAGTGTCATATTAAATATTTTAACAAGTGTCC
Chrysodeixis includens genome assembly, chromosome: 23.
LR824026.1:4233690-4233706
ACGCGGAAACGGAACCCGTCGTGTATAGAA4233690GTATTTGGCGTGATGAATTATACTACTTGGTTATTCGTGCAGTCAGG
Spodoptera littoralis genome assembly, chromosome: 17.
LR824548.2:14410789-14410805
ATAGCGTCACATTTACTACTTAGGTTCGTG14410789GTATTTGGCGTGATGAACCTGACATGTGTTACAATGTCTCTGACTTG
Mamestra brassicae genome assembly, chromosome: 9.
LR990996.1:11414534-11414550
CCAAAACGGTAGCCCTCATTGAAGTTTTGT11414534GTATTTGGCGTGATGAATGATTGCCATAATTATTTGGTCAGGTAATT
Tachina fera genome assembly, chromosome: 5.
LR999967.1:69827592-69827608
ATTTATTATAAATCTACCTCAAATCTTATT69827592GTATTTGGCGTGATGAACACTAATCTGGTAAGGATTTTGATATCCTA
Chrysoteuchia culmella genome assembly, chromosome: 28.
OU342669.1:11011901-11011917
TGTTTTTGTCGAGTCATGTGTTCGAAACGC11011901GTATTTGGCGTGATGAAAGTTTGTTTTCATTTATGAAATATGCATCA
Ptilodon capucinus genome assembly, chromosome: 4.
OU611811.1:501260-501276
GAAGATATTTCAGCTTGTCAAGCAGTTGAT501260GTATTTGGCGTGATGAACACTTATGACAAGGATAGCTCTAAGGATAC
Platycnemis pennipes genome assembly, chromosome: 3.
OW121849.1:108945237-108945253
GCCCGAGGTTGACTGGTTAATCAACATGCC108945237GTATTTGGCGTGATGAATCCTTCAGCGTCGTCCCCGCTAAAACCGTT
Platycnemis pennipes genome assembly, chromosome: 8.
OW121854.1:111837592-111837608
GACCCGAGGGAAATCCGCGAGTCAAGTCTC111837592GTATTTGGCGTGATGAATGGAGGGTCAAGTAGCGAGCGACGAACACT
Anopheles cruzii genome assembly, chromosome: 3.
OX030880.1:8239981-8239997
AACATATCATCCATCAGTGGCGTGGAAAAG8239981GTATTTGGCGTGATGAATCGAATGCTAATTTCCTTGGGTGACTTCTG
Anopheles maculipalpis genome assembly, chromosome: 3.
OX030896.1:3773165-3773181
GACTTCTGAAACACATAATTAGCTCGTAAA3773165GTATTTGGCGTGATGAAAGCTGGAAACTGTGAATGATATTAGGTGCA
Schistosoma rodhaini genome assembly, chromosome: 3.
OX104038.1:23888909-23888925
CGAATGTTTTTGTATATATGTTCTTGATTT23888909GTATTTGGCGTGATGAACACACTGATTGTCATGCGAGTAAAATATCT
Schistosoma rodhaini genome assembly, chromosome: 3.
OX104038.1:23919006-23919022
CGAATGTTTTTGTATATATGTTCTTGATTT23919006GTATTTGGCGTGATGAACACACTGATTGTCATGCGAGTAAAATATCT
Brachypalpus laphriformis genome assembly, chromosome: 1.
OX246753.1:204014639-204014655
ATCTCCAATCGCCAAACCAGTTGTTTTGTT204014639GTATTTGGCGTGATGAAACGATCTGAGTTGTTGAAGATATTCAGTGT
Brachypalpus laphriformis genome assembly, chromosome: 2.
OX246754.1:98777668-98777684
ATCTCCAATCACCAAATCAGTTGTTTTGTT98777668GTATTTGGCGTGATGAAACGATCTGAGTTGTTGAAGATATTCAGTGT
Brachypalpus laphriformis genome assembly, chromosome: 3.
OX246755.1:56555589-56555605
ATCTCCAATCGCCAAATCAGTTGTTTTGTT56555589GTATTTGGCGTGATGAAACGATCTGAGTTGTTGAAGATATTCAGTGT
Brachypalpus laphriformis genome assembly, chromosome: 3.
OX246755.1:93830966-93830982
ATCTCCAATCGCCAAACCAGTTGTTTTGTT93830966GTATTTGGCGTGATGAAACGATCTGAGTTGTTGAAGATATTCAGTGT
Elegia similella genome assembly, chromosome: 11.
OX383936.1:11278565-11278581
TTGTTAAGTTTCATCGAAGTCAGTCAAGTA11278565GTATTTGGCGTGATGAAGTTACGAGTATTGATCCAAACACCCTCACA
Agriopis leucophaearia genome assembly, chromosome: 14.
OX421275.1:5731136-5731152
GGTTATAAATTTGTTACAAGAATTATCGAA5731136GTATTTGGCGTGATGAAGCATTAAATGCCATGGTATCTAACGAGTAT
Tipula unca genome assembly, chromosome: 2.
OX596381.1:133663156-133663172
TGAATGGATACGTCAACAAATAAAAAGCTC133663156GTATTTGGCGTGATGAACAGCCAGAAGAGATTCAAGAGCTCCAATGT
Criorhina ranunculi genome assembly, chromosome: 2.
OX638382.1:3359487-3359503
ATCTCCAATCGCCAAATTGGTTGATTTGTT3359487GTATTTGGCGTGATGAAACGATCTAAGATATTCAGTGTACCACTTGC
Criorhina ranunculi genome assembly, chromosome: 3.
OX638383.1:20164091-20164107
ATCTCCAATCGCCAAATTGGTTGATTTGTT20164091GTATTTGGCGTGATGAAACGATCTAAGTTGTTGAAGATATTCAGTGT
Timandra comae genome assembly, chromosome: 5.
OY292358.1:10939695-10939711
ACTGAATCTATTACCGAAAGTAACAATTCT10939695GTATTTGGCGTGATGAAATAGTCCCGCATAATACTGGTTACAAACTC
Catoptria pinella genome assembly, chromosome: 28.
OY750786.1:6850565-6850581
TGTTTTTGTCGAGTCATGTGTTCGAAACGC6850565GTATTTGGCGTGATGAAAGTTTGTTTTCATTTATGAAATAAGCATAA
Trididemnum clinides genome assembly, chromosome: 20.
OY776303.1:509426-509442
CGACTGATTTATGTATTTTATCTTTTAAAA509426GTATTTGGCGTGATGAATGGCTTGTCGAATTGTTGGGAGTTTAATAT
Muricea muricata genome assembly, chromosome: 10.
OY979725.1:4171186-4171202
CCGCTCACTAGACCATATAGAAAGTCCTTC4171186GTATTTGGCGTGATGAACAGTGATAGTATCGTTTCTTCTAGACTGGG
Rhamphomyia laevipes genome assembly, chromosome: 2.
OY987256.1:26605220-26605236
ATTATGTTGATTCAAATGATGAAGAAAATG26605220GTATTTGGCGTGATGAAATAAACAATAGCAACATTGTTAGTATCTAA
Microdon myrmicae genome assembly, chromosome: 1.
OZ007496.1:24099510-24099526
GGATTTCGAGAATTAACTAGGTTCTGTAGG24099510GTATTTGGCGTGATGAAACCGTGACAAAAGACAGGGTTGTTCCAGAG
Microdon myrmicae genome assembly, chromosome: 2.
OZ007497.1:142663606-142663622
GAGTTTCGAGATTTAACTAGGTTCTGTAGG142663606GTATTTGGCGTGATGAAACCGTGACTATTATCACGTGTGTCGCCGAA
Microdon myrmicae genome assembly, chromosome: 2.
OZ007497.1:199500529-199500545
AGGTTTCGAGATTTAACTAGATTTTGTAGG199500529GTATTTGGCGTGATGAAACCGTGACCATTATCATGTGTGTCATCGAA
Microdon myrmicae genome assembly, chromosome: 3.
OZ007498.1:80037852-80037868
GGGTTTCGAGATTTAACTAGATTTTGTAGG80037852GTATTTGGCGTGATGAAACCGTGACCATTATCAAGTGTATCGAAGTA
Microdon myrmicae genome assembly, chromosome: 4.
OZ007499.1:34647708-34647724
GGGTTTCGAGATTTAACCAGACTCTGTAGT34647708GTATTTGGCGTGATGAAACCGTGACCATTATCACGTGTGTCATCGAA
Microdon myrmicae genome assembly, chromosome: 4.
OZ007499.1:45274719-45274735
GGGTTTCGAGATTTAACTAGATTTTGTAGG45274719GTATTTGGCGTGATGAAGCCGTGATCATTATCACGTGTGTCATCGAA
Microdon myrmicae genome assembly, chromosome: 4.
OZ007499.1:91531208-91531224
GGGTTTCGAGATTTAACTAGATTTTGTAGG91531208GTATTTGGCGTGATGAAACCGTGACCGTTATCACGTGTGTCATCGAA
Microdon myrmicae genome assembly, chromosome: X.
OZ007500.1:74350249-74350265
GGGTTTCGAGATTTAACTAGATTTTGTAGG74350249GTATTTGGCGTGATGAAACCGTGATCATTATCACGTGTGTCATCGAA
Microdon myrmicae genome assembly, chromosome: 6.
OZ007502.1:30743080-30743096
GGGTTTCGAGATTAAACTAGATTTTGTAGG30743080GTATTTGGCGTGATGAAACCGTGACCATTATCACGTGTGTCATCGAA
Onchidella celtica genome assembly, chromosome: 5.
OZ007571.1:49646314-49646330
GAAGGTTAACCGTAGAGCGCCTTGGAGCTT49646314GTATTTGGCGTGATGAAGCGCAGTATAAATTATGGGCACTTTGCTGC
Ophion ventricosus genome assembly, chromosome: 4.
OZ010714.1:9965016-9965032
TAAATTAAACGCAAAATTGCATGGATTATC9965016GTATTTGGCGTGATGAAAAAAGCCTCATTTTTTTGTTAAACTCTCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTATTTGGCGTGATGAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTATTTGGCGTGATGAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.236 | 0.228 | search_plus_done; http://172.18.8.135:50400/match?q=GTATTTGGCGTGATGAA&k=0&no_gap=0&offset=0&limit=50
0.299 | 0.062 | search_minus_done; http://172.18.8.135:50400/match?q=TTCATCACGCCAAATAC&k=0&no_gap=0&offset=0&limit=0
0.299 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).