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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:17:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MUC4LH1001_A10_.b_069. Musa acuminata leaves HOT stress Musa acuminata subsp. burmannicoides cDNA 5', mRNA sequence.
DN237962.1:183-202
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC183GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MUC4LC1007_C09_.b_066. Musa acuminata leaves COLD stress Musa acuminata subsp. burmannicoides cDNA 5', mRNA sequence.
DN239572.1:181-200
AACTCGGCGTCTGCTGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGGTCAATCAGAAAACTCAAGTCGTCAGACC
MUC4LC1007_E01_.b_003. Musa acuminata leaves COLD stress Musa acuminata subsp. burmannicoides cDNA 5', mRNA sequence.
DN239586.1:190-209
TCTGCTGAAACTGGCGTAGAGGGAGGCGTC190GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCGGACCC
MUC4LC1012_A02_.b_005. Musa acuminata leaves COLD stress Musa acuminata subsp. burmannicoides cDNA 5', mRNA sequence.
DN239919.1:188-207
GCGTCTGGCGAAAGCGTAGAGGGAGGCGTC188GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
Embrapa_Mbalbisiana_PKW_Leaf_010_d05_b Embrapa_Musa balbisiana_PKW_Leaf Musa balbisiana cDNA, mRNA sequence.
FL646937.1:326-345
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC326GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
Embrapa_Mbalbisiana_PKW_Leaf_010_e09_b Embrapa_Musa balbisiana_PKW_Leaf Musa balbisiana cDNA, mRNA sequence.
FL646953.1:307-326
AACTCGGCGTCTGCCGAAAAGGGAGGCGTC307GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCATGCCC
Embrapa_Mbalbisiana_PKW_Leaf_023_g04_b Embrapa_Musa balbisiana_PKW_Leaf Musa balbisiana cDNA, mRNA sequence.
FL648225.1:311-330
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC311GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
Embrapa_Mbalbisiana_PKW_Leaf_025_h07_b Embrapa_Musa balbisiana_PKW_Leaf Musa balbisiana cDNA, mRNA sequence.
FL648429.1:313-332
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC313GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES029D_E09 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES029D_E09 5', mRNA sequence.
JK536743.1:183-202
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC183GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES028B_G08 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES028B_G08 5', mRNA sequence.
JK536744.1:183-202
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC183GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-54P17 MA4LIMFES Musa acuminata cDNA clone MAC4-54P17 5', mRNA sequence.
JK536745.1:76-95
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC76GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-69A04 MA4LIMFES Musa acuminata cDNA clone MAC4-69A04 5', mRNA sequence.
JK536746.1:77-96
TCTGGCGAAACTGGCGTAGAGGGAGGCGTC77GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-60F03 MA4LIMFES Musa acuminata cDNA clone MAC4-60F03 5', mRNA sequence.
JK536747.1:68-87
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC68GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-66L16 MA4LIMFES Musa acuminata cDNA clone MAC4-66L16 5', mRNA sequence.
JK536748.1:173-192
TTCTTTCGAGCTGGCGTAGAGGGAGGCGTC173GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES028C_G12 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES028C_G12 5', mRNA sequence.
JK536749.1:179-198
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC179GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES008A_E02 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES008A_E02 5', mRNA sequence.
JK536750.1:179-198
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC179GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES012D_MA4LIMFES012D_D09_.b MA4LIMFES Musa acuminata cDNA clone MA4LIMFES012D_MA4LIMFES012D_D09_.b 5', mRNA sequence.
JK536751.1:188-207
TCTGGCGAAACTGGCGTAGAGGGAGGCGTC188GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES029B_F06 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES029B_F06 5', mRNA sequence.
JK536752.1:179-198
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC179GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES029A_F06 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES029A_F06 5', mRNA sequence.
JK536753.1:179-198
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC179GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-64F16 MA4LIMFES Musa acuminata cDNA clone MAC4-64F16 5', mRNA sequence.
JK536754.1:66-85
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC66GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES001C_MA4LIMFES001C_G05_.b_039 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES001C_MA4LIMFES001C_G05_.b_039 5', mRNA sequence.
JK536755.1:179-198
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC179GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-59K16 MA4LIMFES Musa acuminata cDNA clone MAC4-59K16 5', mRNA sequence.
JK536756.1:74-93
GCGTCTGGCGAAAGCGTAGAGGGAGGCGTC74GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-60M04 MA4LIMFES Musa acuminata cDNA clone MAC4-60M04 5', mRNA sequence.
JK536757.1:66-85
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC66GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-72I03 MA4LIMFES Musa acuminata cDNA clone MAC4-72I03 5', mRNA sequence.
JK536758.1:66-85
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC66GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-55J03 MA4LIMFES Musa acuminata cDNA clone MAC4-55J03 5', mRNA sequence.
JK536759.1:68-87
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC68GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES005D_MA4LIMFES005D_C02_.b_006 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES005D_MA4LIMFES005D_C02_.b_006 5', mRNA sequence.
JK536760.1:176-195
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC176GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES005D_MA4LIMFES005D_F11_.b_091 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES005D_MA4LIMFES005D_F11_.b_091 5', mRNA sequence.
JK536761.1:189-208
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC189GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES002C_MA4LIMFES002C_C04_.b_033 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES002C_MA4LIMFES002C_C04_.b_033 5', mRNA sequence.
JK536762.1:194-213
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC194GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES002B_MA4LIMFES002B_C11_.b_085 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES002B_MA4LIMFES002B_C11_.b_085 5', mRNA sequence.
JK536763.1:180-199
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC180GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES014D_MA4LIMFES014D_C11_.b MA4LIMFES Musa acuminata cDNA clone MA4LIMFES014D_MA4LIMFES014D_C11_.b 5', mRNA sequence.
JK536764.1:189-208
TCTGGCGAAACTGGCGTAAAGGGAGGCGTC189GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACATCGTCATGCCCA
MA4LIMFES006D_A08 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES006D_A08 5', mRNA sequence.
JK536765.1:181-200
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES027D_D08 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES027D_D08 5', mRNA sequence.
JK536766.1:181-200
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES009C_D08 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES009C_D08 5', mRNA sequence.
JK536767.1:181-200
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-67D14 MA4LIMFES Musa acuminata cDNA clone MAC4-67D14 5', mRNA sequence.
JK536768.1:74-93
GCGTCTGGCGAAAGCGTAGAGGGAGGCGTC74GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-56N21 MA4LIMFES Musa acuminata cDNA clone MAC4-56N21 5', mRNA sequence.
JK536769.1:68-87
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC68GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-68I18 MA4LIMFES Musa acuminata cDNA clone MAC4-68I18 5', mRNA sequence.
JK536770.1:74-93
GCGTCTGGCGAAAGCGTAGAGGGAGGCGTC74GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES011C_MA4LIMFES011C_E08_.b MA4LIMFES Musa acuminata cDNA clone MA4LIMFES011C_MA4LIMFES011C_E08_.b 5', mRNA sequence.
JK536771.1:190-209
TCTGGCGAAACTGGCGTAGAGGGAGGCGTC190GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MAC4-60M06 MA4LIMFES Musa acuminata cDNA clone MAC4-60M06 5', mRNA sequence.
JK536772.1:66-85
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC66GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES025B_C05 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES025B_C05 5', mRNA sequence.
JK536773.1:182-201
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC182GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES027C_H07 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES027C_H07 5', mRNA sequence.
JK536774.1:178-197
AACTCGGCGTCTGGCGAAAAGGGAGGCGTC178GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
MA4LIMFES011B_r_MA4LIMFES011B_C07_.b1_050 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES011B_r_MA4LIMFES011B_C07_.b1_050 5', mRNA sequence.
JK536775.1:286-305
TCCTTTCGAGCTGGCGTAGAGGGAGGCGTC286GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGACCC
MA4LIMFES015B_MA4LIMFES015B_F08_.b MA4LIMFES Musa acuminata cDNA clone MA4LIMFES015B_MA4LIMFES015B_F08_.b 5', mRNA sequence.
JK536776.1:288-307
TCCTTTCGAGCTGGCGTAGAGGGAGGCGTC288GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGAACC
MA4LIMFES028C_D07 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES028C_D07 5', mRNA sequence.
JK536777.1:181-200
AACTCGGCGTCTGCTGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGACCC
MA4LIMFES015B_MA4LIMFES015B_C07_.b MA4LIMFES Musa acuminata cDNA clone MA4LIMFES015B_MA4LIMFES015B_C07_.b 5', mRNA sequence.
JK536778.1:181-200
AACTCGGCGTCTGCTGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGACCC
MA4LIMFES009C_F12 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES009C_F12 5', mRNA sequence.
JK536779.1:181-200
AACTCGGCGTCTGCTGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGACCC
MA4LIMFES015A_MA4LIMFES015A_A03_.b MA4LIMFES Musa acuminata cDNA clone MA4LIMFES015A_MA4LIMFES015A_A03_.b 5', mRNA sequence.
JK536780.1:181-200
AACTCGGCGTCTGCTGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGACCC
MA4LIMFES013B_MA4LIMFES013B_E09_.b MA4LIMFES Musa acuminata cDNA clone MA4LIMFES013B_MA4LIMFES013B_E09_.b 5', mRNA sequence.
JK536781.1:181-200
AACTCGGCGTCTGCTGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGACCC
MA4LIMFES002C_MA4LIMFES002C_B09_.b_076 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES002C_MA4LIMFES002C_B09_.b_076 5', mRNA sequence.
JK536782.1:181-200
AACTCGGCGTCTGCTGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGACCC
MA4LIMFES006A_H06 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES006A_H06 5', mRNA sequence.
JK536783.1:181-200
AACTCGGCGTCTGCTGAAAAGGGAGGCGTC181GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGACCC
MA4LIMFES009C_C12 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES009C_C12 5', mRNA sequence.
JK536784.1:183-202
AACTCGGCGTCTGCTGAAAAGGGAGGCGTC183GTCAAAACGTACCCAGCCATGTCAATCAGAAAACTCAAGTCGTCAGACCC
TSA: Deladenus siricidicola DSM_contig15532.myad mRNA sequence.
EZ439990.1:11-30
GGGAGGCGTC11GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC
Gossypium hirsutum clone NBRI_GE14619 microsatellite sequence.
JX581889.1:100-119
TCTGCCGAAACTGGTGTAGCGGGAGGCGTC100GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTGCAGTCGCTAGACCC
Gossypium hirsutum clone NBRI_GE19505 microsatellite sequence.
JX585833.1:16-35
GAAAAGGGAGGCGTC16GTCAAAACGTACCCAGCCATGTCAACCAGAAAACTACAGTCGTCATGCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCAAAACGTACCCAGCCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCAAAACGTACCCAGCCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
4.598 | 4.589 | search_plus_done; http://172.18.8.135:50400/match?q=GTCAAAACGTACCCAGCCAT&k=0&no_gap=0&offset=0&limit=50
4.651 | 0.054 | search_minus_done; http://172.18.8.135:50400/match?q=ATGGCTGGGTACGTTTTGAC&k=0&no_gap=0&offset=0&limit=0
4.651 | 0.000 | cgi_end;

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