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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:03:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS12064G09 KS12 Capsicum annuum cDNA, mRNA sequence.
CA526034.1:18-44
CAAAAAAGCACCCAACT18GTCAAGGATAGACTGTACTTTTCAAGGTAATACAATATTTAAGGAACTTTTATACTA
TSA: Capsicum annuum MGMT_Contig5701, mRNA sequence.
JW055945.1:102-128
AGAATTATGTTGCCAAAAAAGCACCCAACT102GTCAAGGATAGACTGTACTTTTCAAGGTAATACAATATTTAAGGAACTTTTATACTA
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:226124386-226124412
AGAATTATGTTGCCAAAAAAGCACCCAACT226124386GTCAAGGATAGACTGTACTTTTCAAGGTAATACAATATTTAAGGAACTTTTATACTA
Solanum pinnatisectum cultivar CGN17745 chromosome 10.
CP047557.1:55542440-55542466
AATTATGCTGCCAAAGAAGCACTAACAAGA55542440GTCAAGGATAGACTGTACTTTTCAAGGTAATACAATGTTTAAAGAACTTTGTGTACT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 10.
CP124710.1:122091627-122091653
AATTATATTGCCAAAAAAGCACTAACAGCA122091627GTCAAGGATAGACTGTACTTTTCAAGGTAATACAATGTTTAAAGAACTTTTTATACT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:230937265-230937291
AGAATTATGTTGCCAAAAAAGCACCCAACT230937265GTCAAGGATAGACTGTACTTTTCAAGGTAATACAATATTTAAGGAACTTTTATACTA
Solanum verrucosum cultivar 11H23 chromosome 10.
CP133621.1:53190482-53190508
AATTATGCTGCCAAAGAAGCACTAACAAGA53190482GTCAAGGATAGACTGTACTTTTCAAGGTAATACAATGTTTAAAGAACTTTGTGTACT
Solanum lycopersicum Micro-Tom DNA, chromosome 10, draft genome sequence.
AP028944.1:62603102-62603128
AGTCCAAAAAGTTCTTTAAACATTGTATTA62603102CCTTGAAAAGTACAGTCTATCCTTGACTCTTGTTAGTGCTTCTTTGGCAGCATAATT
Solanum lycopersicum cultivar I-3 chromosome 10.
CP023766.1:63413526-63413552
AGTCCAAAAAGTTCTTTAAACATTGTATTA63413526CCTTGAAAAGTACAGTCTATCCTTGACTCTTGTTAGTGCTTCTTTGGCAGCATAATT
Solanum pennellii chromosome ch10, complete genome.
HG975449.1:80317846-80317872
AGTCCAAAAAGTTCTTTAAACATTGTATTA80317846CCTTGAAAAGTACAGTCTATCCTTGACTCTTGTTAGTGCTTCTTTGGCAGCATAATT
Solanum lycopersicum chromosome ch10, complete genome.
HG975522.1:62737236-62737262
AGTCCAAAAAGTTCTTTAAACATTGTATTA62737236CCTTGAAAAGTACAGTCTATCCTTGACTCTTGTTAGTGCTTCTTTGGCAGCATAATT
Solanum lycopersicum genome assembly, chromosome: 10.
OU640353.1:64505848-64505874
AGTCCAAAAAGTTCTTTAAACATTGTATTA64505848CCTTGAAAAGTACAGTCTATCCTTGACTCTTGTTAGTGCTTCTTTGGCAGCATAATT
Solanum dulcamara genome assembly, chromosome: 12.
OX359263.1:5029541-5029567
AGTACAAAAAGTTTTTTAAACATTGTATTA5029541CCTTGAAAAGTACAGTCTATCCTTGACTATTGTTAGGGCTTCTTTGGCAGCATAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCAAGGATAGACTGTACTTTTCAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCAAGGATAGACTGTACTTTTCAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.177 | 0.168 | search_plus_done; http://172.18.8.135:50400/match?q=GTCAAGGATAGACTGTACTTTTCAAGG&k=0&no_gap=0&offset=0&limit=50
0.228 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTGAAAAGTACAGTCTATCCTTGAC&k=0&no_gap=0&offset=0&limit=43
0.232 | 0.004 | cgi_end;

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