GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 16:35:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2007049961-A/1: Method of judging harvest time of apple fruits.
DD491760.1:1156-1175
AAGGCCAGCTTTGATGTATATTTTGCCTAT1156GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
JP 2010226984-A/1: Prognostic method for long-shelf life of fruit in apple breeding.
FW568223.1:1125-1144
AAGGCCAGCTTTGATCTATATTTTGCCTAT1125GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
JP 2010226984-A/2: Prognostic method for long-shelf life of fruit in apple breeding.
FW568224.1:1153-1172
AAGGCCAGCTTTGATCTATATTTTGCCTAT1153GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
000921AALA006317HT (AALA) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALA006317, mRNA sequence.
CN864189.1:205-224
AAGGCCAGCTTTGATGTATATTTTGCCTAT205GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Pyrus pyrifolia pPPACS2 mRNA for 1-aminocyclopropane -1-carboxylate synthase, complete cds.
AB007639.1:55-74
AAGGCCAGCTTTGATGTATATCCTGCCTAT55GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Malus x domestica MdACS3a gene for 1-aminocyclopropane-1-carboxylic acid synthase 3a, complete cds.
AB243060.2:1125-1144
AAGGCCAGCTTTGATCTATATTTTGCCTAT1125GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Pyrus communis 1-aminocyclopropene-1-carboxylate synthase 3a (ACS3a) gene, 5' flanking region and partial cds.
AY388990.1:1268-1287
AAGGCCAGCTTTGATGTATATCTTGCCTAT1268GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Pyrus communis 1-aminocyclopropane-1-carboxylate synthase 2a (DACS2a) gene, 5' flanking region and partial cds.
AY388991.1:986-1005
AAGGCCAGCTTTGATTTTTTTCTTGCCTAT986GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAGTATACA
Pyrus communis 1-aminocyclopropane-1-carboxylate synthase 2b (DACS2b) gene, 5' flanking region and partial cds.
AY388992.1:1307-1326
AAGGCCAGCTTTGATGTATATCTTGCCTAT1307GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Pyrus communis 1-aminocyclopropene-1-carboxylate synthase 3a (ACS3a) gene, promoter region and partial cds.
AY442144.1:1269-1288
AAGGCCAGCTTTGATGTATATCTTGCCTAT1269GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:36873746-36873765
AAGGCCAGCTTTGATGTATATTTTGCCTAT36873746GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:40209183-40209202
AAGGCCAGCTTTGATGTATATTTTGCCTAT40209183GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:36179790-36179809
AAGGCCAGCTTTGATGTATATTTTGCCTAT36179790GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:37300692-37300711
AAGGCCAGCTTTGATCTATATTTTGCCTAT37300692GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:36519143-36519162
AAGGCCAGCTTTGATGTATATTTTGCCTAT36519143GTCACAGAATCAACGATTGATTCTTCTTCTTTTTGTTTTCTCAATATACA
Entomortierella parvispora genome assembly, chromosome: 3.
OY752142.1:334705-334724
GTGGATGCAAAGAAGATGAAGAGACGTACG334705GTCACAGAATCAACGATTGAGGGTTTGGACGTCAAGGGGTCCCTTCAGCG
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:16126571-16126590
TGTATATTGAGAAAACAAAAAGAAGAAGAA16126571TCAATCGTTGATTCTGTGACATAGGCAAAATATAGATCAAAGCTGGCCTT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:14646964-14646983
TGTATATTGAGAAAACAAAAAGAAGAAGAA14646964TCAATCGTTGATTCTGTGACATAGGCAAGATATACATCAAAGCTGGCCTT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:15990940-15990959
TGTATATTGAGAAAACAAAAAGAAGAAGAA15990940TCAATCGTTGATTCTGTGACATAGGCAAAATATAGATCAAAGCTGGCCTT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:16264898-16264917
TGTATATTGAGAAAACAAAAAGAAGAAGAA16264898TCAATCGTTGATTCTGTGACATAGGCAAAATATACATCAAAGCTGGCCTT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:16170549-16170568
TGTATATTGAGAAAACAAAAAGAAGAAGAA16170549TCAATCGTTGATTCTGTGACATAGGCAAAATATACATCAAAGCTGGCCTT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:16237376-16237395
TGTATATTGAGAAAACAAAAAGAAGAAGAA16237376TCAATCGTTGATTCTGTGACATAGGCAAAATATAGATCAAAGCTGGCCTT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:16086645-16086664
TGTATATTGAGAAAACAAAAAGAAGAAGAA16086645TCAATCGTTGATTCTGTGACATAGGCAAAATATACATCAAAGCTGGCCTT
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:13098552-13098571
TGTATATTGAGAAAACAAAAAGAAGAAGAA13098552TCAATCGTTGATTCTGTGACATAGGCAAGATATACATCAAAGCTGGCCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCACAGAATCAACGATTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCACAGAATCAACGATTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.208 | 0.199 | search_plus_done; http://172.18.8.135:50400/match?q=GTCACAGAATCAACGATTGA&k=0&no_gap=0&offset=0&limit=50
0.508 | 0.300 | search_minus_done; http://172.18.8.135:50400/match?q=TCAATCGTTGATTCTGTGAC&k=0&no_gap=0&offset=0&limit=34
0.513 | 0.005 | cgi_end;

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