GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 12:10:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EG-F01_004_D11 Oil palm female inflorescence Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600805.1:38-58
TTTGCCATGTTGGGTGCGCTCGCATGGCAG38GTCACCGAACCCTAATAAAATTTTTATGTTTTTTTGGTAGGGGAGATCGCA
OPSC01654 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 865_2-T3.seq, mRNA sequence.
EL689876.1:39-59
TTTGCCATGTTGGGTGCGCTCGCATGGCAG39GTCACCGAACCCTAATAAAATTTTTATGTTTTTTTGGTAGGGGAGATCGCA
OPR04556 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A4246A.seq, mRNA sequence.
EL694493.1:44-64
TTTGCCATGTTGGGTGCGCTCGCATGGCAG44GTCACCGAACCCTAATAAAATTTTTATGTTTTTTTGGTAGGGGAGATCGCA
OPR04557 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A4246B.seq, mRNA sequence.
EL694494.1:44-64
TTTGCCATGTTGGGTGCGCTCGCATGGCAG44GTCACCGAACCCTAATAAAATTTTTATGTTTTTTGGTAGGGGAGATCGCAC
pOP-EO02677_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02677 5', mRNA sequence.
EY409183.1:49-69
TTTGCCATGTTGGGTGCGCTCGCATGGCAG49GTCACCGAACCCTAATAAAATTTTTATGTCCTTTTTGGCATGGGACATCCC
pOP-EO02206_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02206 5', mRNA sequence.
EY412853.1:46-66
TTTGCCATGTTGGGTGCGCTCGCATGGCAG46GTCACCGAACCCTAATAAAATTTTTATGTTTTTTTTGGTAGGGGAGATCGC
Elaeis guineensis EST, clone (6lib)_isotig03067.
LM615269.1:1125-1145
TTTGCCATGTTGGGTGCGCTCGCATGGCAG1125GTCACCGAACCCTAATAAAATTTTTATGTTTTTTTGGTAGGGGAGATCGCA
TSA: Elaeis guineensis isotig05105.Elguifruit mRNA sequence.
JO092359.1:770-790
TTTGCCATGTTGGGTGCGCTCGCATGGCAG770GTCACCGAACCCTAATAAAATTTTTATGTTTTTTTGGTAGGGGAGATCGCA
TSA: Elaeis guineensis isotig05106.Elguifruit mRNA sequence.
JO092360.1:680-700
TTTGCCATGTTGGGTGCGCTCGCATGGCAG680GTCACCGAACCCTAATAAAATTTTTATGTTTTTTTGGTAGGGGAGATCGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCACCGAACCCTAATAAAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCACCGAACCCTAATAAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.586 | 0.577 | search_plus_done; http://172.18.8.135:50400/match?q=GTCACCGAACCCTAATAAAAT&k=0&no_gap=0&offset=0&limit=50
0.618 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTTATTAGGGTTCGGTGAC&k=0&no_gap=0&offset=0&limit=41
0.618 | 0.000 | cgi_end;

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