GGGenome | Results

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2025-04-12 10:22:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Tridacna derasa genome assembly, chromosome: 13.
OY723426.1:7255115-7255134

TTTTTTTTCCCACCTGCTCTTTTCAGGAAA7255115GTCACTCAACAACGAAACCAATGATTCCCGTGATACACATGGGAAATATA

CSATR1JP_T3_007_G05_19DEC2008_025 CSATR1JP Cannabis sativa cDNA, mRNA sequence.
JK498730.1:28-47

CTGTTCAAGAATTTTTTGCATTAAAAT28TGGTTTCGTTGTTGAGTGACATTATGGCTTTAGCCTTAACCAATCTTTCG

TSA: Cannabis sativa PK16884.3_1.CasaPuKu mRNA sequence.
JP449992.1:342-361

TTACTGTTCTAGAATTTTTTGCATTAAAAT342TGGTTTCGTTGTTGAGTGACAGTATGGCTTTAGCCTTAACCAATCTTTCG

TSA: Cannabis sativa PK16884.1_1.CasaPuKu mRNA sequence.
JP469187.1:63-82

TCACTGTTCAAGAATTTTTTGCATTAAAAT63TGGTTTCGTTGTTGAGTGACAGTATGGCTTTAGCCTTAACCAATCTTTCG

Hippopus hippopus genome assembly, chromosome: 13.
OX328108.1:45202186-45202205

TATATTTCCCATGTGTATCACGGGAATCAT45202186TGGTTTCGTTGTTGAGTGACTTTCCTGAAAAGAGCAGGTGGGAAAAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=GTCACTCAACAACGAAACCA&k=0&no_gap=0&offset=0&limit=50
0.242 | 0.139 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTTTCGTTGTTGAGTGAC&k=0&no_gap=0&offset=0&limit=49
0.245 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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