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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 20:15:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:68446802-68446821
GTTTTTTTGTAAGCTTGAGTGGAAAGTTAT68446802GTCATATTCATCCCCAAAACATTCCTCCATTTCACGGACCCTACTTGAGT
Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
HG670306.1:318842683-318842702
TACTTCAAACGTCAATTTCTCGGATCTGGA318842683GTCATATTCATCCCCAAAACTACCTACAATTCGATCTTACCGATTGGTAC
Triticum aestivum genome assembly, chromosome: 3B.
LR878442.1:324640219-324640238
TACTTCAAACGTCAATTTCTCGGATCTGGA324640219GTCATATTCATCCCCAAAACTACCTACAATTCGATCTTACCGATTGGTAC
Triticum aestivum genome assembly, chromosome: 3B.
LS992087.1:317305806-317305825
TACTTCAAACGTCAATTTCTCGGATCTGGA317305806GTCATATTCATCCCCAAAACTACCTACAATTCGATCTTACCGATTGGTAC
Aegilops speltoides subsp. speltoides genome assembly, chromosome: 1B.
OX082597.1:57764915-57764934
TACTTCAAACGCCAATTTCTCGGCTTCGGA57764915GTCATATTCATCCCCAAAACCTACCTCCAATTCGATCTTACCGACTGGAT
Xylota sylvarum genome assembly, chromosome: 2.
LR999958.1:7096755-7096774
TAAGTTCCAAAAGGGTGGCGAGAAGTGCAT7096755GTCATATTCATCCCCAAAACTGGGAAAGCATGTCATAAGGACTTTAGACC
Melanostoma mellinum genome assembly, chromosome: 3.
OU612060.1:156923832-156923851
AGATTCACCTTATTGGACAAACATTAAAGA156923832GTCATATTCATCCCCAAAACTGATGAGCTCTCGCACACTGAACCAAAGGA
Melanostoma scalare genome assembly, chromosome: 1.
OX456984.1:218176949-218176968
TTTATCCCAACTAGTTGGAGAGATGTTGAA218176949GTCATATTCATCCCCAAAACTGGTAAGCCTATTAAGTATAAGCCTATCCT
Melanostoma scalare genome assembly, chromosome: 3.
OX456986.1:139212015-139212034
TATTCCTGCTAGCTGGACAGACATTAAAGA139212015GTCATATTCATCCCCAAAACTGATGAGCCCTCGTACACTGAACCAAAGGA
Dasysyrphus tricinctus genome assembly, chromosome: 2.
OY992531.1:218838720-218838739
TATATTCCCTCTAGTTGCAGAGAAGTCAAT218838720GTCATATTCATCCCCAAAACCGGCAATCCCACCCACACTGAAACGAATGA
TSA: Silene latifolia Sl_contig10878 mRNA sequence.
JO768425.1:1614-1633
AGCCAATAAAATTCGATTCTGAGTCCAGTG1614GTTTTGGGGATGAATATGACGCCTTTTCTAATTTCAAATATCAGAGCGGT
Lotus japonicus genomic DNA, chromosome 4, clone: LjB23A24, BM1588.
AP008167.2:40746-40765
ACTCAAGTAGGGTCCGTGAAATGGAGGAAT40746GTTTTGGGGATGAATATGACATAACTTTCCACTCAAGCTTACAAAAAAAC
Arabidopsis thaliana genome assembly, chromosome: 5.
OX291670.1:14615823-14615842
CTTTGAGAAGCAAGAAGAATGTTGGTTAGT14615823GTTTTGGGGATGAATATGACTTGATGTCATGTGTATGATTGAGTATAAAA
Arabidopsis thaliana genome assembly, chromosome: 5.
OX291670.1:14619919-14619938
CTTTGAGAAGCAAGAAGAATGTTGGTTAGT14619919GTTTTGGGGATGAATATGACTTGATGTCATGTGTATGATTGAGTATAAAA
Sambucus nigra genome assembly, chromosome: 1.
OX422207.1:783833219-783833238
CACCGGATATATAGTCCTAAGTTAGAATTG783833219GTTTTGGGGATGAATATGACAGTTGGTTACATTACGATTCACTTTGGGTG
Cerastoderma edule genome assembly, chromosome: 11.
OX401414.1:28794826-28794845
GGGGTTATTTTTTTGAAATTATAACAATGG28794826GTTTTGGGGATGAATATGACTTGAAACAACGAGTATTTTGGGAAAAAAAT
Melanostoma scalare genome assembly, chromosome: 2.
OX456985.1:73543970-73543989
GATATGTTTACTGTGTGCGAGGGCCTTTCG73543970GTTTTGGGGATGAATATGACTTTAGTTTTTTTTTTACCTTAAGCGATGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCATATTCATCCCCAAAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCATATTCATCCCCAAAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.254 | 0.245 | search_plus_done; http://172.18.8.135:50400/match?q=GTCATATTCATCCCCAAAAC&k=0&no_gap=0&offset=0&limit=50
0.378 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTTGGGGATGAATATGAC&k=0&no_gap=0&offset=0&limit=40
0.383 | 0.005 | cgi_end;

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