GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 06:31:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus DNA, clone:LjB06h24_f.
AG222034.1:634-653
TCATATTAAATTCAAAATACCAAATTGATG634GTCCCAGTCATGATCAAAAGTAATTTATAACTTTATTGAAAAATTAGAAA
Lotus japonicus genomic DNA, chromosome 6, clone: LjT34O10, TM0880.
AP010122.1:73975-73994
TCATATTAAATTCAAAATACCAAATTGATG73975GTCCCAGTCATGATCAAAAGTAATTTATAACTTTATTGAAAAATTAGAAA
Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:55684957-55684976
TCATATTAAATTCAAAATACCAAATTGATG55684957GTCCCAGTCATGATCAAAAGTAATTTATAACTTTATTGAAAAATTAGAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828093.1:540843569-540843588
CTCGTCTTCATCATCAAGGAAGAGAGATAG540843569GTCCCAGTCATGATCAAAAGGATTCTTGGGACGACTAGGAACCAGGCTAG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX459976.1:552424118-552424137
CTCGTCTTCATCATCAAGGAAGAGAGATAG552424118GTCCCAGTCATGATCAAAAGGATTCTTGGGACGACTAGGAACCAGGCTAG
Agrostemma githago genome assembly, chromosome: 18.
OY288256.1:16269954-16269973
GTGAATTTCCTGATGATGCTAGAGCTGTCC16269954CTTTTGATCATGACTGGGACTCAAGCAGCCGAGACTCCGAGGACAGCGAG
Urbanus simplicius genome assembly, chromosome: 3.
OX453059.1:2923579-2923598
GTGGCGTCTTCTATTGTTAATTGTTCTTCA2923579CTTTTGATCATGACTGGGACTTTTTGAAGGGGAGGAAGTTCAGTTAAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCCCAGTCATGATCAAAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCCCAGTCATGATCAAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.091 | 0.082 | search_plus_done; http://172.18.8.135:50400/match?q=GTCCCAGTCATGATCAAAAG&k=0&no_gap=0&offset=0&limit=50
0.108 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTTGATCATGACTGGGAC&k=0&no_gap=0&offset=0&limit=45
0.109 | 0.001 | cgi_end;

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