GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 21:03:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR076152 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-067H08 5', mRNA sequence.
EX089862.1:53-72
AGTTAGTTACACAAACTTCTTCCACAAGTC53GTCCGCTTCTTCACCAAAATCTTCACACTCTTTTTCACCTCTACACACAT
Brassica rapa subsp. pekinensis clone KBrH136O12, complete sequence.
FP340390.1:59111-59130
AGTTAGTTACACAAACTTCTTCCACAAGTC59111GTCCGCTTCTTCACCAAAATCTTCACACTCTTTTTCACCTCTACACACAT
Brassica rapa genome, scaffold: A07.
LR031574.1:17605397-17605416
AGTTAGTTACACAAACTTCTTCCACAAGTC17605397GTCCGCTTCTTCACCAAAATCTTCACACTCTTTTTCACCTCTACACACAT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:17897062-17897081
AGTTAGTTACACAAACTTCTTCCACAAGTC17897062GTCCGCTTCTTCACCAAAATCTTCACACTCTTTTTCACCTCTACACACAT
Alsophila aescularia genome assembly, chromosome: 10.
OX276383.1:22456322-22456341
GGAAACTGTGTTGTGATTATTAAAAACTCC22456322GTCCGCTTCTTCACCAAAATTATTTAACCTCCAACAAAATCTCCACAGTC
Mechanitis mazaeus genome assembly, chromosome: 1.
OY365743.1:12639857-12639876
GGCTGGTGCACTGCGTACTGCTTATCTCCC12639857GTCCGCTTCTTCACCAAAATAACTTAGCACCGTTTCGATACATTCATTTG
Mechanitis messenoides genome assembly, chromosome: 7.
OY365766.1:7073481-7073500
GGCTGGTGCACTGCGTACTGCTTATCTCCC7073481GTCCGCTTCTTCACCAAAATAACTTAGCGCCGTTTCGATACATTCATTTG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 99 unordered pieces.
FJ789646.1:808880-808899
ATGTGTGTAGAAGTGGAGAAGAGTGTGAAG808880ATTTTGGTGAAGAAGCGGACGACTTGTGGAAGAAGTTTGTGTAACTAACT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
AC189445.2:114554-114573
ATGTGTGTAGAGGTGAAAAAGAGTGTGAAG114554ATTTTGGTGAAGAAGCGGACGACTTGTGGAAGAAGTTTGTGTAACTAACT
Plagodis dolabraria genome assembly, chromosome: 15.
OY978455.1:30199559-30199578
GCGCCGGCGGCGCGCGGCGCCGGCGGTGCC30199559ATTTTGGTGAAGAAGCGGACTATTATATTTTAGTTTGTAAATCTATTATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCCGCTTCTTCACCAAAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCCGCTTCTTCACCAAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.177 | 0.168 | search_plus_done; http://172.18.8.135:50400/match?q=GTCCGCTTCTTCACCAAAAT&k=0&no_gap=0&offset=0&limit=50
0.210 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTTGGTGAAGAAGCGGAC&k=0&no_gap=0&offset=0&limit=43
0.212 | 0.002 | cgi_end;

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