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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:37:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cajanus cajan cultivar UPAS 120 contig22853.UPAS mRNA sequence.
EZ640570.1:40-59
AACACGAGAGTCGCATCATCTTTTTTTTTG40GTCCGTTGAAAAACAAAGAGTGTGGCTTTCGTCGTTTGGAGAGAGAGAGA
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq5.
LJ319183.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq7.
LJ319185.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq8.
LJ319186.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq9.
LJ319187.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq10.
LJ319188.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq18.
LJ319196.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq19.
LJ319197.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq21.
LJ319199.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq24.
LJ319202.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq25.
LJ319203.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
TSA: Myrmica sulcinodis mRNA, contig: comp24231_c1_seq26.
LJ319204.1:687-706
TGAAAAAGGTGTAACGAATGATGTAGTATC687GTCCGTTGAAAAACAAAGAGATGCTAGACCGATAGATTCCAAATATTCAG
1024016F10.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence.
BG847306.1:658-677
TTTTGGAGGTTCTGTTACATATTTATTTGA658CTCTTTGTTTTTCAACGGACTTGAACTGTGAAATAACTTTTTTCGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCCGTTGAAAAACAAAGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCCGTTGAAAAACAAAGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.369 | 0.360 | search_plus_done; http://172.18.8.135:50400/match?q=GTCCGTTGAAAAACAAAGAG&k=0&no_gap=0&offset=0&limit=50
0.405 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTTTGTTTTTCAACGGAC&k=0&no_gap=0&offset=0&limit=38
0.405 | 0.001 | cgi_end;

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