GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:42:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Ipomoea batatas mRNA, clone: IbKAES01E20, unspecified EST, cultivar: Koukei 14.
HX980680.1:660-679
GGGAGCTTGGGATTGGGATTGTTGCATACA660GTCCTCTGGGACGAGGATTTTTGTCGTCGGGTCCAAAAGTGGTTGAGAAT
Ipomoea triloba cultivar NCNSP0323 chromosome 4.
CP025663.1:11985302-11985321
GGGAGCTTGGGATTGGAATTGTAGCATACA11985302GTCCTCTGGGACGAGGATTTTTGTCGTCGGGTCCAAAAGTAGTTGTGAAT
Daucus carota subsp. sativus cultivar DH1 chromosome 1.
CP093343.1:45209035-45209054
GAGAGTTAGGCATTGGGATTGTTGCATATA45209035GTCCTCTGGGACGAGGATTTTTGTCAGGAGGTTCAGATATGGTCGCAAGC
Climacium dendroides genome assembly, chromosome: 2.
OX467083.1:49143341-49143360
GGGAATTGGGGATTGGAATCGTTTCTTACA49143341GTCCTCTGGGACGAGGATTTCTGGCCGGGTATAAGGCGGGGACGACCACG
Isothecium myosuroides genome assembly, chromosome: 1.
OX637287.1:2216055-2216074
GAGAACTGGGGATTGGAATCGTACCTTACA2216055GTCCTCTGGGACGAGGATTTCTGGCGGGGTTTAAGGCGGGGTCGACGTCG
Isothecium myosuroides genome assembly, chromosome: 1.
OX637287.1:12914975-12914994
GGGAATTGGGAATTGGAATCGTACCTTACA12914975GTCCTCTGGGACGAGGATTTCTGGCAGGGTATAAGGCGGGGACGACCTCA
Straminergon stramineum genome assembly, chromosome: 1.
OY987263.1:1689104-1689123
GGGAACTGGGGATTGGAATCGTACCTTACA1689104GTCCTCTGGGACGAGGATTTCTGGCGGGGTTTAAGGTGGGGCGACCTCGG
Ipomoea trifida cultivar NCNSP0306 chromosome 4.
CP025647.1:6972266-6972285
ATTCTCAACTACTTTTGGACCTGACGACAA6972266AAATCCTCGTCCCAGAGGACTGTATGCAACAATTCCAATCCCAAGCTCCC
Thuidium tamariscinum genome assembly, chromosome: 10.
OX344758.1:205678-205697
CGAGGTCGCCCCCGCCTTAAACCCCGCCAG205678AAATCCTCGTCCCAGAGGACTGTAAGGTACGATTCCAATCCCTAGTTCCC
Rhytidiadelphus loreus genome assembly, chromosome: 2.
OX344762.1:1845522-1845541
CGAGGTCGTCCCCGCCTTATACCCTGCCAG1845522AAATCCTCGTCCCAGAGGACTGTAAGGTACGATTCCAATCCCCAATTCCC
Climacium dendroides genome assembly, chromosome: 2.
OX467083.1:49161307-49161326
TGAGGTCGTCCCCGGCTTATAACCTGCCAG49161307AAATCCTCGTCCCAGAGGACTGTAAGAAACGATTCCAATCCCCAATTCCC
Antitrichia curtipendula genome assembly, chromosome: 2.
OX579634.1:1416015-1416034
TGAGGTAGTCCCCGCCTTGTACCCTGCCAG1416015AAATCCTCGTCCCAGAGGACTGTAAGCTACGACTCCAATCCCCAATTCCC
Isothecium myosuroides genome assembly, chromosome: 1.
OX637287.1:1536918-1536937
TGAGGTCGTCCCCGCCTTATACCCTGCCAG1536918AAATCCTCGTCCCAGAGGACTGTAAGCTACGATTCCAATCCCCAATTCCC
Isothecium myosuroides genome assembly, chromosome: 1.
OX637287.1:1555664-1555683
TGAGGTCGTCCCCGCCTTAAACCCTGCCAG1555664AAATCCTCGTCCCAGAGGACTGTAAGCTACGATTCCAATCCCCAATTCCC
Straminergon stramineum genome assembly, chromosome: 1.
OY987263.1:1108390-1108409
CGTGGTCGTCCCCGACTTATACCCTGCCAG1108390AAATCCTCGTCCCAGAGGACTATAAGGTACGATTCCAATCCCCAATTCCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCCTCTGGGACGAGGATTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCCTCTGGGACGAGGATTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.428 | 0.419 | search_plus_done; http://172.18.8.135:50400/match?q=GTCCTCTGGGACGAGGATTT&k=0&no_gap=0&offset=0&limit=50
0.526 | 0.098 | search_minus_done; http://172.18.8.135:50400/match?q=AAATCCTCGTCCCAGAGGAC&k=0&no_gap=0&offset=0&limit=43
0.532 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).