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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 14:39:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Symplocarpus renifolius mRNA, clone: INB03A01NGRM0002_F09, 3' end sequence, expressed in spadices.
FY780850.1:319-339
CTTGTGGCACCTCTTGACGAGGCGGACGCT319GTCCTTGGCGAAATCCCTCAGGGGATCCACGGCGGAATCGATCGCGTCCAT
Symplocarpus renifolius mRNA, clone: INB05A01NGRM0011_B12, 3' end sequence, expressed in spadices.
FY781734.1:402-422
CTTGTGGCACCTCTTGACGAGGCGGACGCT402GTCCTTGGCGAAATCCCTCAGGGGATCCACGGCGGAATCGATCGCGTCCAT
Sequence 632 from patent US 8937220.
HK377298.1:192-212
ATGGATGCGTTGGATTCAGTTTTCGATCCG192CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
Sequence 632 from patent US 9487795.
KH352271.1:192-212
ATGGATGCGTTGGATTCAGTTTTCGATCCG192CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
Sequence 632 from Patent EP3000889.
LQ340328.1:192-212
ATGGATGCGTTGGATTCAGTTTTCGATCCG192CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
Sequence 632 from patent US 10597671.
MO981698.1:192-212
ATGGATGCGTTGGATTCAGTTTTCGATCCG192CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CGN-4343 Pericarp Coffea canephora cDNA clone cccp24d16 5', mRNA sequence.
DV666460.1:98-118
ATGGATGCGTTGGATTCAGTTTTCGATCCG98CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CGN-9686 Pericarp Coffea canephora cDNA clone cccp8f23 5', mRNA sequence.
DV673566.1:98-118
ATGGATGCGTTGGATTCAGTTTTCGATCCG98CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CGN-14713 Pericarp Coffea canephora cDNA clone cccp32a8 5', mRNA sequence.
DV677350.1:98-118
ATGGATGCGTTGGATTCAGTTTTCGATCCG98CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CGN-35174 Leaf Coffea canephora cDNA clone cccl16i8 5', mRNA sequence.
DV691480.1:191-211
ATGGATGCGTTGGATTCATTTTTCGATCCG191CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
TransId-73823 CACAT36FL Coffea arabica cDNA clone CACAT36FL_43_M11_173.F similar to Symbol: None | protein transport protein SEC61 gamma subunit, putative, similar to Swiss-Prot:Q19967 protein transpo
GR982020.1:161-181
ATGGATGCGTTGGATTCAGTTTTCGATCCG161CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
TransId-83676 CACAT36FR28 Coffea arabica cDNA clone CACAT36FR28_Q2_12_04D01.F similar to Symbol: None | protein transport protein SEC61 gamma subunit, putative, similar to Swiss-Prot:Q19967 protein tr
GR984789.1:121-141
ATGGATGCGTTGGATTCAGTTTTCGATCCG121CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
TransId-242315 CACAT36FR26 Coffea arabica cDNA clone CACAT36FR26-CAFR216TV similar to 50S ribosomal protein L27, chloroplast precursor - Nicotiana tabacum (Common tobacco), mRNA sequence.
GT010169.1:135-155
ATGGATGCGTTGGATTCAGTTTTCGATCCG135CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAGGCGCTGCCACAAG
TransId-248389 CACAT36FR31 Coffea arabica cDNA clone CACAT36FR31_Q2_01_K08_123.F similar to 50S ribosomal protein L27, chloroplast precursor - Nicotiana tabacum (Common tobacco), mRNA sequence.
GT013125.1:135-155
ATGGATGCGTTGGATTCAGTTTTCGATCCG135CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
TransId-253326 CAET1425FR28 Coffea arabica cDNA clone CAET1425FR28-CAET793TV similar to 50S ribosomal protein L27, chloroplast precursor - Nicotiana tabacum (Common tobacco), mRNA sequence.
GT013785.1:54-74
ATGGATGCGTTGGATTCAGTTTTCGATCCG54CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CR00-XX-FV2-004-F01-EM.F Coffea racemosa FV2 Coffea racemosa cDNA clone CR00-XX-FV2-004-F01-EM, mRNA sequence.
GT664776.1:116-136
ATGGATGCGTTGGATTCAGTTTTCGATCCG116CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CA00-XX-CL2-026-G08-CE.F Coffea arabica CL2 Coffea arabica cDNA clone CA00-XX-CL2-026-G08-CE, mRNA sequence.
GT676891.1:37-57
ATGGATGCGTTGGATTCAGTTTTCGATCCG37CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CA00-XX-FB2-040-C02-AB.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-040-C02-AB, mRNA sequence.
GT703877.1:110-130
ATGGATGCGTTGGATTCAGTTTTCGATCCG110CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CA00-XX-FR2-056-E05-CE.F Coffea arabica FR2 Coffea arabica cDNA clone CA00-XX-FR2-056-E05-CE, mRNA sequence.
GT706380.1:86-106
ATGGATGCGTTGGATTCAGTTTTCGATCCG86CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CA00-XX-CS1-092-F06-AB.F Coffea arabica CS1 Coffea arabica cDNA clone CA00-XX-CS1-092-F06-AB, mRNA sequence.
GT724914.1:63-83
ATGGATGCGTTGGATTCAGTTTTCGATCCG63CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CA00-XX-CS1-092-G06-AB.F Coffea arabica CS1 Coffea arabica cDNA clone CA00-XX-CS1-092-G06-AB, mRNA sequence.
GT724915.1:46-66
ATGGATGCGTTGGATTCAGTTTTCGATCCG46CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CA00-XX-RT8-004-F12-JE.F Coffea arabica RT8 Coffea arabica cDNA clone CA00-XX-RT8-004-F12-JE, mRNA sequence.
GT728702.1:40-60
ATGGATGCGTTGGATTCAGTTTTCGATCCG40CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CA00-XX-RT8-003-H10-JE.F Coffea arabica RT8 Coffea arabica cDNA clone CA00-XX-RT8-003-H10-JE, mRNA sequence.
GT728703.1:36-56
ATGGATGCGTTGGATTCAGTTTTCGATCCG36CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CA00-XX-RT8-004-G12-JE.F Coffea arabica RT8 Coffea arabica cDNA clone CA00-XX-RT8-004-G12-JE, mRNA sequence.
GT728704.1:124-144
ATGGATGCGTTGGATTCAGTTTTCGATCCG124CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG
CA00-XX-CB1-082-H02-JF.F Coffea arabica CB1 Coffea arabica cDNA clone CA00-XX-CB1-082-H02-JF, mRNA sequence.
GT734012.1:100-120
ATGGATGCGTTGGATTCAGTTTTCGATCCG100CTGAGGGATTTCGCCAAGGACAGCGTTCGTCTGGTCAAGCGCTGCCACAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCCTTGGCGAAATCCCTCAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCCTTGGCGAAATCCCTCAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.487 | 0.479 | search_plus_done; http://172.18.8.135:50400/match?q=GTCCTTGGCGAAATCCCTCAG&k=0&no_gap=0&offset=0&limit=50
2.468 | 1.981 | search_minus_done; http://172.18.8.135:50400/match?q=CTGAGGGATTTCGCCAAGGAC&k=0&no_gap=0&offset=0&limit=48
2.483 | 0.015 | cgi_end;

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