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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 17:30:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-3889 Pericarp Coffea canephora cDNA clone cccp18d15 5', mRNA sequence.
DV666126.1:325-346
GACCCGTTCTTAAAGAAATCACCCTCATGA325GTCGACAACAGCGCTCAAGATCACCCTTGGGATTGGCTGAAAATAGACCTAT
CGN-11841 Pericarp Coffea canephora cDNA clone cccp6m10 5', mRNA sequence.
DV675032.1:325-346
GACCCGTTCTTAAAGAAATCACCCTCATGA325GTCGACAACAGCGCTCAAGATCACCCTTGGGATTGGCTGAAAATAGACCTAT
CGN-40102 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w11k6 5', mRNA sequence.
DV695288.1:325-346
GACCAGTTCTTAAAGAAATCACCCTCATGA325GTCGACAACAGCGCTCAAGATCACCCTTGGGATTGGCTGAAAATAGACCTAT
CGN-47169 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w16j13 5', mRNA sequence.
DV701050.1:357-378
GACCAGTTCTTAAAGAAATCACCCTCATGA357GTCGACAACAGCGCTCAAGATCACCCTTGGGATTGGCTGAAAATAGACCTAT
CGN-48923 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w25m2 5', mRNA sequence.
DV702531.1:325-346
GACCAGTTCTTAAAGAAATCACCCTCATGA325GTCGACAACAGCGCTCAAGATCACCCTTGGGATTGGCTGAAAATAGACCTAT
CGN-51797 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w9a15 5', mRNA sequence.
DV704885.1:320-341
GACCCGTTCTTAAAGAAATCACCCTCATGA320GTCGACAACAGCGCTCAAGATCACCCTTGGGATTGGCTGAAAATAGACCTAT
CGN-53243 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w4o8 5', mRNA sequence.
DV705999.1:320-341
GACCCGTTCTTAAAGAAATCACCCTCATGA320GTCGACAACAGCGCTCAAGATCACCCTTGGGATTGGCTGAAAATAGACCTAT
TransId-102575 CACAT45FR Coffea arabica cDNA clone CACAT45FR_M004_C13_195.F similar to Symbol: None | expressed protein | chr1:25477207-25477803 FORWARD | Aliases: T23K23.23, T23K23_23, mRNA sequence.
GR991041.1:141-162
GACCCGTTCTTAAAGAAATCACCCTCATGA141GTCGACAACAGCGCTCAAGATCACCCTTGGGATTGGCTGAAAATAGACCTAT
CCES10 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110665.1:325-346
GACCCGTTCTTAAAGAAATCACCCTCATGA325GTCGACAACAGCGCTCAAGATCACCCTTGGGATTGGCTGAAAATAGACCTAT
AFP0AAA57YJ11RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO574792.1:435-456
ATAGGTCTATTTTCAGCCAATCCCAAGGGT435GATCTTGAGCGCTGTTGTCGACTGACGAGGGTGATTTCTTTAAGAGCTGGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCGACAACAGCGCTCAAGATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCGACAACAGCGCTCAAGATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.700 | 0.692 | search_plus_done; http://172.18.8.135:50400/match?q=GTCGACAACAGCGCTCAAGATC&k=0&no_gap=0&offset=0&limit=50
0.838 | 0.137 | search_minus_done; http://172.18.8.135:50400/match?q=GATCTTGAGCGCTGTTGTCGAC&k=0&no_gap=0&offset=0&limit=41
0.839 | 0.001 | cgi_end;

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