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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:57:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

ZO__Eg0009K18.r ZO__Eg Zingiber officinale cDNA clone ZO__Eg0009K18 3', mRNA sequence.
DY381799.1:118-137
TTCGCCAAGCGAACGGACATCGACGCGGAG118GTCGACCGCATCTACTCCTCCGCGGCCGCCGCCGCCGCTGCGCTTATGGC
CL__Ea0004G07.f CL__Ea Curcuma longa cDNA clone CL__Ea0004G07 5', mRNA sequence.
DY384932.1:315-334
TTCGCCAAGCGAACGGACATCGACGCGGAG315GTCGACCGCATCTACTCCTCCGCGGCCGCCGCCGCCGCTGCGCTTATGGC
CL__Eb0005K05.f CL__Eb Curcuma longa cDNA clone CL__Eb0005K05 5', mRNA sequence.
DY391556.1:750-769
TTCGCCAAGCGAACGGACATCGCGGCGGAG750GTCGACCGCATCTACTCCTCCGCGGCCGCCGCTGCTGC
Musa acuminata subsp. malaccensis isolate AA chromosome 2.
CP126371.1:24293640-24293659
TTCGCCAAGCGGGCGAGCATCGAGGCGGAA24293640GTCGACCGCATCTACTCCTCCGCGTCCGCCGCCCCCGCAGCACTCATGGC
Musa acuminata subsp. malaccensis isolate AA chromosome 13.
CP126382.1:24399508-24399527
TTCGCCAAGCGGGCGAGCATCGAGGCGGAA24399508GTCGACCGCATCTACTCCTCCGCGTCCGCCGCCCCCGCAGCACTCATGGC
Canna indica chromosome 8.
CP136897.1:74062662-74062681
TTCGCCAAGCGGGAGGACATCGAGGCGGAG74062662GTCGACCGCATCTACTCCTCCGCGGCCGCCGCCGCTGCGGCGCTCCTCGC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A02.
HG996467.1:22932092-22932111
TTCGCCAAGCGGGCGAGCATCGAGGCGGAA22932092GTCGACCGCATCTACTCCTCCGCGTCCGCCGCCCCCGCAGCACTTATGGC
Musa schizocarpa genome assembly, chromosome: S02.
LS990916.1:24844638-24844657
TTCGCCAAGCGGGCGAGCATCGCGGCGGAA24844638GTCGACCGCATCTACTCCTCCGCGTCCGCCGCCCCCGCAGCACTTATGGC
Lochmaea crataegi genome assembly, chromosome: 5.
OX387427.1:20897122-20897141
GACAACAAATCCGTAGTCCGCTTTCATTTT20897122GTCGACCGCATCTACTCCTCCTTTTGTAACATTGTCGTCTGTAATCATTT
ZO__Ea0003O18.f ZO__Ea Zingiber officinale cDNA clone ZO__Ea0003O18 5', mRNA sequence.
DY346345.1:236-255
GCCATAAGCGCAGCGGCAGCGGCGGCCGCG236GAGGAGTAGATGCGGTCGACCTCCGCGTCGATGTCCGTTCGCTTGGCGAA
ZO__Ec0008M07.f ZO__Ec Zingiber officinale cDNA clone ZO__Ec0008M07 5', mRNA sequence.
DY355452.1:176-195
GCCATAAGCGCAGCGGCGGCGGCGGCCGCG176GAGGAGTAGATGCGGTCGACCTCCGCGTCGATGTCCGTTCGCTTGGCGAA
ZO__Eg0001G06.f ZO__Eg Zingiber officinale cDNA clone ZO__Eg0001G06 5', mRNA sequence.
DY375834.1:172-191
GCCATAAGCGCAGCGGCAGCGGCGGCCGCG172GAGGAGTAGATGCGGTCGACCTCCGCGTCGATGTCCGTTCGCTTGGCGAA
ZO__Eg0006J07.f ZO__Eg Zingiber officinale cDNA clone ZO__Eg0006J07 5', mRNA sequence.
DY379580.1:149-168
GCCATAAGCGCAGCGGCGGCGGCGGCCGCG149GAGGAGTAGATGCGGTCGACCTCCGCGTCGATGTCCGTTCGCTTGGCGAA
ZO__Eg0008O09.f ZO__Eg Zingiber officinale cDNA clone ZO__Eg0008O09 5', mRNA sequence.
DY381263.1:696-715
GCCATAAGCACAGCGGCAGCGGCGGCCGCG696GAGGAGTAGATGCGGTCGACCTCCGCGTCGATGTCCGTTCGCTTGGCGAA
ZO__Eg0009K18.f ZO__Eg Zingiber officinale cDNA clone ZO__Eg0009K18 5', mRNA sequence.
DY381798.1:247-266
GCCATAAGCGCAGCGGCGGCGGCGGCCGCG247GAGGAGTAGATGCGGTCGACCTCCGCGTCGATGTCCGTTCGCTTGGCGAA
CL__Eb0005K05.r CL__Eb Curcuma longa cDNA clone CL__Eb0005K05 3', mRNA sequence.
DY391557.1:206-225
GCCATGAGCGCAGCAGCAGCGGCGGCCGCG206GAGGAGTAGATGCGGTCGACCTCCGCCGCGATGTCCGTTCGCTTGGCGAA
TSA: Costus pictus Locus_13195_Transcript_1/1.Copileaf mRNA sequence.
JW219344.1:35-54
GCCATAAGCGCCGCCACCGCCTCCGCCGCC35GAGGAGTAGATGCGGTCGACCTCCGTCTCCACCTCCGCCCGCTTCACTAA
TSA: Curcuma longa Locus_21177_Transcript_1/1_Confidence_1.000_Length_318_C mRNA sequence.
JW785668.1:291-310
GCCATGAGCGCAGCAGCAGCGGCGGCCGCG291GAGGAGTAGATGCGGTCGACCTCCGCCG
Lochmaea crataegi genome assembly, chromosome: 2.
OX387424.1:42934234-42934253
AAATGATTACAGACTACAATGTTACAAAAG42934234GAGGAGTAGATGCGGTCGACAAAATTTAAGCGGACTACACTAATTTGTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCGACCGCATCTACTCCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCGACCGCATCTACTCCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.340 | 0.332 | search_plus_done; http://172.18.8.135:50400/match?q=GTCGACCGCATCTACTCCTC&k=0&no_gap=0&offset=0&limit=50
1.056 | 0.716 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGAGTAGATGCGGTCGAC&k=0&no_gap=0&offset=0&limit=41
1.063 | 0.007 | cgi_end;

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