GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 10:14:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Beta vulgaris Locus_23926_Transcript_5/10_Confidence_0.308_Length_3463 mRNA sequence.
JP515468.1:2459-2483
TTTGGGGAGTACGCATTGGTGTCATCCCTT2459GTCGAGGTGTCTGAGAATAATTTGCAAGAAGAGCATGGGTTGCACCACTTCCTTC
TSA: Beta vulgaris Locus_23926_Transcript_7/10_Confidence_0.346_Length_3560 mRNA sequence.
JP515470.1:2430-2454
TTTGGGGAGTACGCATTGGTGTCATCCCTT2430GTCGAGGTGTCTGAGAATAATTTGCAAGAAGAGCATGGGTTGCACCACTTCCTTC
TSA: Beta vulgaris Locus_23926_Transcript_9/10_Confidence_0.231_Length_3368 mRNA sequence.
JP515472.1:2430-2454
TTTGGGGAGTACGCATTGGTGTCATCCCTT2430GTCGAGGTGTCTGAGAATAATTTGCAAGAAGAGCATGGGTTGCACCACTTCCTTC
Spinacia oleracea subsp. turkestanica cultivar PI494751 chromosome X.
CP130739.1:7679567-7679591
TCTGGGGAGTACGCATGGGTGTCATCCCCT7679567GTCGAGGTGTCTGAGAATAATTTGCTAGAAGAGCATGAGTTGCACCACTCCCTTC
Spinacia oleracea subsp. turkestanica cultivar PI494751 chromosome Y.
CP130887.1:7647199-7647223
TCTGGGGAGTACGCATGGGTGTCATCCCCT7647199GTCGAGGTGTCTGAGAATAATTTGCTAGAAGAGCATGAGTTGCACCACTCCCTTC
TSA: Beta vulgaris Locus_23926_Transcript_4/10_Confidence_0.308_Length_2573 mRNA sequence.
JP515467.1:1107-1131
GAAGGAAGTGGTGCAACCCATGCTCTTCTT1107GCAAATTATTCTCAGACACCTCGACAAGGGATGACACCAATGCGTACTCCCCAAA
TSA: Beta vulgaris Locus_23926_Transcript_6/10_Confidence_0.308_Length_2544 mRNA sequence.
JP515469.1:1107-1131
GAAGGAAGTGGTGCAACCCATGCTCTTCTT1107GCAAATTATTCTCAGACACCTCGACAAGGGATGACACCAATGCGTACTCCCCAAA
TSA: Beta vulgaris Locus_23926_Transcript_8/10_Confidence_0.346_Length_3560 mRNA sequence.
JP515471.1:1107-1131
GAAGGAAGTGGTGCAACCCATGCTCTTCTT1107GCAAATTATTCTCAGACACCTCGACAAGGGATGACACCAATGCGTACTCCCCAAA
TSA: Beta vulgaris Locus_23926_Transcript_10/10_Confidence_0.346_Length_3560 mRNA sequence.
JP515473.1:1107-1131
GAAGGAAGTGGTGCAACCCATGCTCTTCTT1107GCAAATTATTCTCAGACACCTCGACAAGGGATGACACCAATGCGTACTCCCCAAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392550.1:9184685-9184709
GAAGGAAGTGGTGCAACCCATGCTCTTCTT9184685GCAAATTATTCTCAGACACCTCGACAAGGGATGACACCAATGCGTACTCCCCAAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392559.1:9032019-9032043
GAAGGAAGTGGTGCAACCCATGCTCTTCTT9032019GCAAATTATTCTCAGACACCTCGACAAGGGATGACACCAATGCGTACTCCCCAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCGAGGTGTCTGAGAATAATTTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCGAGGTGTCTGAGAATAATTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.130 | 0.121 | search_plus_done; http://172.18.8.135:50400/match?q=GTCGAGGTGTCTGAGAATAATTTGC&k=0&no_gap=0&offset=0&limit=50
0.193 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAATTATTCTCAGACACCTCGAC&k=0&no_gap=0&offset=0&limit=45
0.197 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).