GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:32:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 2 from patent US 6930227.
AR706376.1:407-428
AAATGATTTCAATACCCTCTTCAAAGGCCT407GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
Sequence 3 from patent US 6930227.
AR706377.1:407-428
AAATGATTTCAATACCCTCTTCAAAGGCCT407GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
Sequence 2 from Patent EP1055727.
AX138776.1:407-428
AAATGATTTCAATACCCTCTTCAAAGGCCT407GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
Sequence 3 from Patent EP1055727.
AX138777.1:407-428
AAATGATTTCAATACCCTCTTCAAAGGCCT407GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
JP 2001037490-A/1: Gene encoding caffein synthetic system-related enzyme and utilization thereof.
BD004678.1:407-428
AAATGATTTCAATACCCTCTTCAAAGGCCT407GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
JP 2001037490-A/2: Gene encoding caffein synthetic system-related enzyme and utilization thereof.
BD004679.1:407-428
AAATGATTTCAATACCCTCTTCAAAGGCCT407GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
JP 2002085072-A/16: Gene encoding caffein synthetic system-related enzyme and utilization thereof.
BD134668.1:407-428
AAATGATTTCAATACCCTCTTCAAAGGCCT407GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
PJS-166-T7 Subtractive cDNA library specific for young leaves of tea Camellia sinensis cDNA clone PJS-166, mRNA sequence.
CV699587.1:415-436
AAATGATTTCAATACCCTCTTCAAAGGCCT415GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTTCGTGTTATGTGATG
Camellia sinensis mRNA, clone: LR14G01, 5' end sequence, expressed in lateral roots.
FS944396.1:461-482
AAATGATTTCAATACCCTCTTCAAGGGCCT461GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
Camellia sinensis mRNA, clone: TB19D08, 5' end sequence, expressed in terminal buds.
FS955795.1:446-467
AAATGATTTCAATACCCTCTTCAAAGGCCT446GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTTCGTGTTATGTGATG
Camellia sinensis mRNA, clone: TB26A01, 5' end sequence, expressed in terminal buds.
FS956230.1:311-332
AAATGATTTCAATACCCTCTTCAAAGGCCT311GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
Camellia sinensis mRNA, clone: YL16C09, 5' end sequence, expressed in young leaves.
FS959723.1:408-429
AAATGATTTCAATACCCTCTTCAAAGGCCT408GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
SSH_H311_T3E3_70_TRA_11091 Camellia sinensis AQMI1 cDNA library Camellia sinensis cDNA 5', mRNA sequence.
HS397402.1:465-486
AAATGATTTCAATACCCTCTTCAAAGGCCT465GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
SSH_H311_T3E3_BG_137_TRA_11143 Camellia sinensis AQMI1 cDNA library Camellia sinensis cDNA 5', mRNA sequence.
HS397555.1:468-489
AAATGATTTCAATACCCTCTTCAAAGGCCT468GTCGTCTGAGGTTATTGGTAACAAATGTGAGGA
LJSB162F LIB-EST LJSB (Longjing 43 sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone SB162, mRNA sequence.
JZ485746.1:399-420
AAATGATTTCAATACCCTCTTCAAAGGCCT399GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTTCGTGTTATGTGATG
ZDSB36F LIB-EST ZDSB (Zhenghe Dabaicha sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone ZDSB36, mRNA sequence.
JZ495160.1:410-431
AAATGATTTCAATACCCTCTTCAAAGGCCT410GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTTCGTGTTATGTGATG
TSA: Camellia sinensis tea_rep_c951 mRNA sequence.
KA280393.1:489-510
AAATGATTTCAATACCCTCTTCAAAGGCCT489GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
TSA: Camellia sinensis tea_rep_c24596 mRNA sequence.
KA302947.1:187-208
AAATGATTTCAATACCCTCTTCAAAGGCCT187GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
Camellia sinensis TCS1 mRNA for caffeine synthase, complete cds.
AB031280.1:437-458
AAATGATTTCAATACCCTCTTCAAAGGCCT437GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG
Camellia sinensis var. sinensis caffeine synthase 1 mRNA, partial cds.
AY570929.1:413-434
AAATGATTTCAATACCCTCTTCAAAGGCCT413GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTTCGTGTTATGTGATG
Camellia sinensis caffeine synthase gene, complete cds.
EF526217.1:4288-4309
AAATGATTTCAATACCCTCTTCAAAGGCCT4288GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTTCGTGTTATGTGATG
Camellia sinensis caffeine synthase 1 (TCS1) gene, complete cds.
JX647690.1:4743-4764
AAATGATTTCAATACCCTCTTCAAAGGCCT4743GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTTCGTGTTATGTGATG
Camellia crassicolumna caffeine synthase mRNA, complete cds.
KT215398.1:348-369
AAATGATTTCAATACCCTCTTCAAAGGCCT348GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCTTGTTATGTGATG
Camellia sinensis var. assamica caffeine synthase (CkCS) mRNA, complete cds.
MN163829.1:348-369
AAATGATTTCAATACCCTCTTCAAAGGCCT348GTCGTCTGAGGTTATTGGTAACAAATGTGAGGAAGTTCCGTGTTATGTGATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCGTCTGAGGTTATTGGTAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCGTCTGAGGTTATTGGTAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.083 | 1.074 | search_plus_done; http://172.18.8.135:50400/match?q=GTCGTCTGAGGTTATTGGTAAC&k=0&no_gap=0&offset=0&limit=50
1.184 | 0.101 | search_minus_done; http://172.18.8.135:50400/match?q=GTTACCAATAACCTCAGACGAC&k=0&no_gap=0&offset=0&limit=26
1.184 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).