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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:39:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR2ER45TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD540939.1:117-136
TCAAAAGCGATCTTGGAAGCTTCCCTGTTA117GTCTATTGAAGCCAACGTCAAGCGTCTGTGTCAGAGCACCACTGTGGAAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082C18, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC232525.1:72803-72822
TTCTAAGCGATCTTGGGAGCTTCCCGGTTA72803GTCTATTGAAGCCAACGTCAAGGGTTTGTGTCAAAGCGCCGCTATAGAAC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:8010041-8010060
TTCTAAGCGATCTTGGGAGCTTCCCGGTTA8010041GTCTATTGAAGCCAACGTCAAGGGTTTGTGTCAAAGCGCCGCTATAGAAC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:8029408-8029427
TTCTAAGCGATCTTGGGAGCTTCCCGGTTA8029408GTCTATTGAAGCCAACGTCAAGGGTTTGTGTCAAAGCGCCGCTATAGAAC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:10837928-10837947
TTCTAAGCGATCTTGGGAGCTTCCCGGTTA10837928GTCTATTGAAGCCAACGTCAAGGGTTTGTGTCAAAGCGCCGCTATAGAAC
Brassica rapa genome, scaffold: A03.
LR031572.1:8056786-8056805
TTCTAAGCGATCTTGGGAGCTTCCCGGTTA8056786GTCTATTGAAGCCAACGTCAAGGGTTTGTGTCAAAGCGCCGCTATAGAAC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:10818112-10818131
TTCTAAGCGATCTTGGGAGCTTCCCGGTTA10818112GTCTATTGAAGCCAACGTCAAGGGTTTGTGTCGAAGTGCCGCTATAGAAC
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:9114384-9114403
TTAAAAGCGATCTTGGGAGCTTCCCGGTTA9114384GTCTATTGAAGCCAACGTCAAGCGTCTGTGTCAGAGCACCACTGTGGAAC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:8150920-8150939
TTCTAAGCGATCTTGGGAGCTTCCCGGTTA8150920GTCTATTGAAGCCAACGTCAAGGGTTTGTGTCAAAGCGCCGCTATAGAAC
Abrostola triplasia genome assembly, chromosome: 12.
OX276432.1:7667065-7667084
GCAATAATTCCAAAACCAAATGTACGTATG7667065GTCTATTGAAGCCAACGTCAAACAATGACATTGTTTATTTAAAGTGTTGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_38110.
FX682960.1:128-147
GTTCCACAGTGGTGCTTTGACGCAGACGCT128TGACGTTGGCTTCAATAGACTAACGGGGAAGCTCCCAAGATCGCTTTTGA
BOGQZ87TR BOGQ Brassica oleracea genomic clone BOGQZ87, genomic survey sequence.
BH449370.1:246-265
GTTCTATAGCGGCGCTTTGACACAAACCCT246TGACGTTGGCTTCAATAGACTAACCGGGAAGCTCCCAAGATCGCTTAGAA
BONKE51TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONKE51, genomic survey sequence.
BZ444233.1:442-461
GTTCTATAGCGGCGCTTTGACACAAACCCT442TGACGTTGGCTTCAATAGACTAACCGGGAAGCTCCCAAGATCGCTTAGAA
BONII93TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONII93, genomic survey sequence.
BZ498878.1:590-609
GTTCTATAGCGGCGCTTTGACACAAACCCT590TGACGTTGGCTTCAATAGACTAACCGGGAAGCTCCCAAGATCGCTTAGAA
KBrH118P16 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT011081.1:620-639
GTTCTATAATGGCGCTTTGACGAAGACCCT620TGACGTTGGCTTCAATAGACTAACTGGGAAGCTTCCAAGATCACTATTGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080O07, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189477.2:125858-125877
GTTCTATAGCGGCGCTTTGACACAAACCCT125858TGACGTTGGCTTCAATAGACTAACCGGGAAGCTCCCAAGATCGCTTAGAA
Brassica napus putative leucine-rich repeat disease resistance protein-like mRNA, complete sequence.
AY919864.1:1193-1212
GTTCTATAGCGGCGCTTTGACACAAACCCT1193TGACGTTGGCTTCAATAGACTAACCGGGAAGCTCCCAAGATCGCTTAGAA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:68438713-68438732
GTTCTATAGCGGCGCTTTGACACAAACCCT68438713TGACGTTGGCTTCAATAGACTAACCGGGAAGCTCCCAAGATCGCTTAGAA
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:26407898-26407917
GTTCCACAGTGGTGCTCTGACACAGACGCT26407898TGACGTTGGCTTCAATAGACTAACCGGGAAGCTCCCAAGATCGCTTTTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCTATTGAAGCCAACGTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCTATTGAAGCCAACGTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.266 | 0.257 | search_plus_done; http://172.18.8.135:50400/match?q=GTCTATTGAAGCCAACGTCA&k=0&no_gap=0&offset=0&limit=50
0.405 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=TGACGTTGGCTTCAATAGAC&k=0&no_gap=0&offset=0&limit=40
0.411 | 0.006 | cgi_end;

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