GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:23:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Daucus carota subsp. sativus cultivar DH1 chromosome 4.
CP093346.1:44718842-44718862
AACTTGCTTCTGTACCAGTAGACTCCCTTA44718842GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCCCTGTAC
Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22469696-22469716
ATATCCTTTCGGTACCAGTAGACTCCTTTA22469696GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCTCGGTAC
Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22476964-22476984
ATATCCTTTTTGTACCAGTAGACTCCTTTG22476964GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCTCTGTAC
Daucus carota isolate Kuroda chromosome 4.
CP125304.1:33008707-33008727
AACTTGCTTCTGTACCAGTAGACTCCCTTA33008707GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCCCTGTAC
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:34668815-34668835
ATATCCTTTCTGTACCAGTAGACTCCTTTA34668815GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCTCGGTAC
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:34674635-34674655
ATATCCTTTCTGTACCAGTAGACACCTTTT34674635GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCTCTGTAC
Hermetia illucens genome assembly, chromosome: 6.
LR899014.1:86289503-86289523
TTCGTAACAAGTTGTTTTCCGTGTAGGGTT86289503GTCTCGCCTTCATCTTTCTCCGTCTGCAGCGGTCACCACGTGGAGGTGGAG
Cenchrus purpureus cultivar elephant grass chromosome A7.
CP053460.1:154596421-154596441
ATCAGGTCTGTATGCATGCTTCAAAGGGAA154596421GGAGAAAGATGAAGGCGAGACGTACCCTACCACTGCTTGGAGAAGTCAATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCTCGCCTTCATCTTTCTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCTCGCCTTCATCTTTCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.133 | 0.124 | search_plus_done; http://172.18.8.135:50400/match?q=GTCTCGCCTTCATCTTTCTCC&k=0&no_gap=0&offset=0&limit=50
0.172 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGAAAGATGAAGGCGAGAC&k=0&no_gap=0&offset=0&limit=43
0.173 | 0.001 | cgi_end;

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