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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 21:13:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 5102 from Patent EP2221382.
HH768915.1:730-749
ATATACAGTAGGAGAGGCGGCGGGCTCAAC730GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGAGGCGGGTCTAAGTA
BN25.066E03F020122 BN25 Brassica napus cDNA clone BN25066E03, mRNA sequence.
CD827082.1:670-689
ATATACAGTAGGAGAGGCGGCGCGCTCAAC670GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGCGGCGGGTCGAAGTA
0118625 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113313.1:624-643
ATATACAGTAGGAGAGGCGGCGGGCTCAAC624GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGAGGCGGGTCTAAGTA
0120372 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115060.1:623-642
ATATACAGTAGGAGAGGCGGCGGGCTCAAC623GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGAGGCGGGTCTAAGTA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1951.
FX692559.1:702-721
ATATACAGTAGGAGAGGCGGCGCGCTCAAC702GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGCGGCGGGTCGAAGTA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_24097.
FX726742.1:445-464
ATATACAGTAGGAGAGGCGGCGCGCTCAAC445GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGCGGCGGGTCGAAGTA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:40214210-40214229
ATATACAGTAGGAGAGGCGGCGGGCTCAAC40214210GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGAGGCGGGTCTAAGTA
Brassica napus mRNA for nitrate reductase, complete cds.
D38220.1:834-853
ATATACAGTAGGAGAGGCGGCGGGCTCAAC834GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGAGGCGGGTCTAAGTA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:20581764-20581783
ATATACAGTAGGAGAGGCGGCGCGCTCAAC20581764GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGCGGCGGGTCGAAGTA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:33973329-33973348
ATATACAGTAGGAGAGGCGGCGGGCTCAAC33973329GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGAGGCGGGTCTAAGTA
Brassica rapa nitrate reductase (NR) mRNA, complete cds.
KP852556.1:738-757
ATATACAGTAGGAGAGGCGGCGCGCTCAAC738GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGCGGCGGATCGAAGTA
Brassica juncea cultivar Varuna nitrate reductase 1 (NIA1) mRNA, complete cds.
KT119587.1:830-849
ATATACAGTAGGAGAGGCGGCGCGCTCAAC830GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGCGGCGGGTCGAAGTA
Brassica rapa genome, scaffold: A07.
LR031574.1:19536342-19536361
ATATACAGTAGGAGAGGCGGCGCGCTCAAC19536342GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGCGGCGGGTCGAAGTA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:30636917-30636936
ATATACAGTAGGAGAGGCGGCGGGCTCAAC30636917GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGAGGCGGGTCTAAGTA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:19827548-19827567
ATATACAGTAGGAGAGGCGGCGCGCTCAAC19827548GTCTGCTTTGAAGGAGCGGAGGATCTTCCCGGAGGCGGCGGGTCGAAGTA
Mystacides longicornis genome assembly, chromosome: 11.
OY756431.1:10033687-10033706
CTTCTCCCACACCATGTCCATATTCCTCAG10033687GTCTGCTTTGAAGGAGCGGAACACAGAATGAGAGGGTTTCCTCGTCTTTG
Mystacides longicornis genome assembly, chromosome: 16.
OY756436.1:25963887-25963906
CTTCTCCCACACCATGTCCAACTCTCTCAG25963887GTCTGCTTTGAAGGAGCGGAACACAGTATGAGAGGGTCTTCCTCGTCCTT
Eptesicus nilssonii genome assembly, chromosome: 2.
OX621281.1:78021352-78021371
CTGAGCCTAAAAGGGTAGAGGAAAACGGTT78021352TCCGCTCCTTCAAAGCAGACATTTTATGGGAGAGTATACTTACACTCCAA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:9043100-9043119
TACTTCGACCCGCCGCCTCCGGGAAGATCC9043100TCCGCTCCTTCAAAGCAGACGTTGAGCGCGCCGCCTCTCCTACTGTATAT
Streptomyces sp. NBC_00024 chromosome, complete genome.
CP108298.1:5653061-5653080
ACGCCTCCGGCTCACAGACCCCGGGCGCGA5653061TCCGCTCCTTCAAAGCAGACGACGTCACCGCGATCGAGTACGCCTACAAC
Mystacides longicornis genome assembly, chromosome: 2.
OY756421.1:29397710-29397729
GAAGATGAGGAAAACCCTCCCATGCTGTTA29397710TCCGCTCCTTCAAAGCAGACCTGAGGAATCTAGACATGGTGTAAGAGGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCTGCTTTGAAGGAGCGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCTGCTTTGAAGGAGCGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.590 | 0.581 | search_plus_done; http://172.18.8.135:50400/match?q=GTCTGCTTTGAAGGAGCGGA&k=0&no_gap=0&offset=0&limit=50
0.707 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=TCCGCTCCTTCAAAGCAGAC&k=0&no_gap=0&offset=0&limit=33
0.709 | 0.003 | cgi_end;

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