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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:54:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

odg85f04.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH922902.1:673-693
AATATAATAACCTAATGACCTTGCACGACG673GTCTTCTCTGAGCTCGTTGACGATG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
AC189621.1:2854-2874
AATATAATAACCTAATGACCTTGCACGACG2854GTCTTCTCTGAGCTCGTTGACGATGACAGATATTAAAAAACTGAATTGTAT
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 6.
CP094636.1:1415068-1415088
ATTAATATACTCTAATGACCTTGCACGACG1415068GTCTTCTCTGAGCTCGTTGACGATGACAGATTAAGAAAATTGAAATTCGAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:1158913-1158933
AATATAATAACCTAATGACCTTGCACGACG1158913GTCTTCTCTGAGCTCGTTGACGATGACAGATATTAAAAAACTGAATTGTAT
Camelina sativa cultivar CO46 chromosome 2.
CP131550.1:1240325-1240345
ATAAATATATTCTAATGACCTTGCACGACG1240325GTCTTCTCTGAGCTCGTTGACGATGACAGATTAAGAAAATTGAAACTTTGA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:1071227-1071247
AATATAATAACCTAATGACCTTGCACGACG1071227GTCTTCTCTGAGCTCGTTGACGATGACAGATATTAAAAAACTGAATTGTAT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:829318-829338
AATATAATAACCTAATGACCTTGCACGACG829318GTCTTCTCTGAGCTCGTTGACGATGACAGATATTAAAAAACTGAATAGTAT
Brassica rapa genome, scaffold: A09.
LR031568.1:866973-866993
AATATAATAACCTAATGACCTTGCACGACG866973GTCTTCTCTGAGCTCGTTGACGATGACAGATATTAAAAAACTGAATTGTAT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:879403-879423
AATATAATAACCTAATGACCTTGCACGACG879403GTCTTCTCTGAGCTCGTTGACGATGACAGATATTAAAAAACTGAATAGTAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:1052458-1052478
AATATAATAACCTAATGACCTTGCACGACG1052458GTCTTCTCTGAGCTCGTTGACGATGACAGATATTAAAAAACTGAATTGTAT
Cardamine flexuosa genome assembly, chromosome: 8.
OY743221.1:20135537-20135557
ATAAATATATTCTAATGACCTTGCACGACG20135537GTCTTCTCTGAGCTCGTTGACGATGACAGATTAAGAAAACTGAAATTTGAT
Nasturtium officinale genome assembly, chromosome: 15.
OY978513.1:10518560-10518580
TAAAATATATTCTAATGACCTTGCACGACG10518560GTCTTCTCTGAGCTCGTTGACCCTGACATATTAAGAAAACTGAAATATGAT
Raphanus sativus cultivar WK10039 clone RsH001M11, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.
AC255158.1:46707-46727
TCATATTTTCAGTTTTTTATATCTGTCTTC46707GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTAGGTTATTATATT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:68349357-68349377
ATACTATTCAGTTTTTTAATATCTGTCATC68349357GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTAGGTTATTATATT
Camelina sativa cultivar CO46 chromosome 13.
CP131543.1:25683802-25683822
ATCGAATTTCAATTTTCTTAATCTGTCATC25683802GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTACTCATTAGAGTA
Camelina sativa cultivar CO46 chromosome 8.
CP131557.1:24977874-24977894
CGAATTTCAATTTTCTTAATATCTGTCATC24977874GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTAGAGTATATGAAT
Capsella bursa-pastoris isolate WGS_leaf chromosome 6.
CP144188.1:24885731-24885751
TAATCAAATTTTTTTGTTAAATCTGTCATC24885731GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTAGAAATTTATTTA
Capsella bursa-pastoris isolate WGS_leaf chromosome 14.
CP144196.1:23469477-23469497
ACAACAATAATTTTTGTTAAATCTGTCATC23469477GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTAGAAATTTATTTA
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:32452987-32453007
CATATTTTCAGTTTTTTTATATCTGTCTTC32452987GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTAGGTTATTATATT
Arabidopsis arenosa genome assembly, chromosome: 6.
LR999456.1:18560313-18560333
CTAATAATCAAATTTTCTTAATCTGTCATC18560313GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTAAAGTATATTTAT
Thlaspi arvense genome assembly, chromosome: 6.
OU466862.2:61748661-61748681
TAAAAAAATTCAGTTTTTAATTCTGTCATC61748661GTCAACGAGCTCAGAGAAGACCGTCGTGCAAAGTCACTATATCTATATTTT
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:32452987-32453007
CATATTTTCAGTTTTTTTATATCTGTCTTC32452987GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTAGGTTATTATATT
Nasturtium officinale genome assembly, chromosome: 7.
OY978505.1:525211-525231
TTAAATTTCAGTTTTTATTAATCTGTCATC525211GTCAACGAGCTCAGAGAAGACCATCGTGCAAGGTCATTAGAATATATTTAT
Cardamine chenopodiifolia genome assembly, chromosome: 16.
OZ000474.1:647466-647486
TCAAATTTCAGTTTTTTTTAATCTGTCATC647466GTCAACGAGCTCAGAGAAGACCGTCGTGCAAGGTCATTAGAATATATTTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCTTCTCTGAGCTCGTTGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCTTCTCTGAGCTCGTTGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.193 | 0.184 | search_plus_done; http://172.18.8.135:50400/match?q=GTCTTCTCTGAGCTCGTTGAC&k=0&no_gap=0&offset=0&limit=50
0.306 | 0.113 | search_minus_done; http://172.18.8.135:50400/match?q=GTCAACGAGCTCAGAGAAGAC&k=0&no_gap=0&offset=0&limit=38
0.314 | 0.008 | cgi_end;

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