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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
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2025-04-03 08:11:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica napus genome assembly, chromosome: C09.
HG994373.1:54158464-54158483
AACACTGAGAAGTGCGAGGTGATTAGTCCC54158464GTGAACGAGGTTGACCTTCTTCTCAAATCTGTAATCGAATTTGTTGTCCC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:52307111-52307130
AACACTGAGAAGTGCGAGGTGATTAGTCCC52307111GTGAACGAGGTTGACCTTCTTCTCAAATCTGTAATCGAATTTGTTGTCCC
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:26453517-26453536
AACGCTGAGAAGTGCAAGGTGATTAGTCCC26453517GTGAACGAGGTTGACCTTCTTCTCAAATCTGTAATCGAATTTATTGTCCC
Sequence 118480 from Patent WO2008034648.
FB899207.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 123030 from Patent WO2008034648.
FB903757.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 124268 from Patent WO2008034648.
FB904995.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 131419 from Patent WO2008034648.
FB912146.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 133629 from Patent WO2008034648.
FB914356.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 143495 from Patent WO2008034648.
FB924222.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 118480 from Patent EP2090662.
HB769266.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 123030 from Patent EP2090662.
HB773816.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 124268 from Patent EP2090662.
HB775054.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 131419 from Patent EP2090662.
HB782205.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 133629 from Patent EP2090662.
HB784415.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
Sequence 143495 from Patent EP2090662.
HB794281.1:1586-1605
GGGACAACAAATTCGATTACAGATTTGAGA1586AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT
RR4AU36TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV568167.1:249-268
GGGACAATAAATTCGATTACAGATTTGAGA249AGAAGGTCAACCTCGTTCACGGGACTAATCACCTTGCACTTCTCAGCGTT
RR4AX16TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV568422.1:249-268
GGGACAATAAATTCGATTACAGATTTGAGA249AGAAGGTCAACCTCGTTCACGGGACTAATCACCTTGCACTTCTCAGCGTT
RS2EI43TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY941452.1:192-211
GGGACAATAAATTCGATTACAGATTTGAGA192AGAAGGTCAACCTCGTTCACGGGACTAATCACCTTGCACTTCTCAGCGTT
RS1GY17TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD941185.1:193-212
GGGACAATAAATTCGATTACAGATTTGAGA193AGAAGGTCAACCTCGTTCACGGGACTAATCACCTTGCACTTCTCAGCGTT
RR1H951TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD966129.1:390-409
GGGACAATAAATTCGATTACAGATTTGAGA390AGAAGGTCAACCTCGTTCACGGGACTAATCACCTTGCACTTCTCAACGTT
RR4FX02TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD986221.1:6-25
GGAGA6AGAAGGTCAACCTCGTTCACGGGACTAATCACCTTGCACTTCTCAGCGTT
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:6525865-6525884
GGGACAATAAATTCGATTACAGATTTGAGA6525865AGAAGGTCAACCTCGTTCACGGGACTAATCACCTTGCACTTCTCAGCGTT
B.oleracea mRNA for beta-D-galactosidase.
X84684.1:1611-1630
GGGACAACAAATTCGATTACAGATTTGAGA1611AGAAGGTCAACCTCGTTCACGGGACTAATCACCTCGCACTTCTCAGTGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTGAACGAGGTTGACCTTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGAACGAGGTTGACCTTCT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.212 | 0.203 | search_plus_done; http://172.18.8.135:50400/match?q=GTGAACGAGGTTGACCTTCT&k=0&no_gap=0&offset=0&limit=50
0.959 | 0.747 | search_minus_done; http://172.18.8.135:50400/match?q=AGAAGGTCAACCTCGTTCAC&k=0&no_gap=0&offset=0&limit=47
0.973 | 0.013 | cgi_end;

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