GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 17:36:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Phocoena phocoena genome assembly, chromosome: 15.
OZ004772.1:85653535-85653554
TTCCAGAATGATTCTCTGTGGGCCGTGTTT85653535GTGAATGTTGAACCTGAGTCTTTGAGTCAGGGCTGTCTCTGAATGAACCC
Lotus japonicus genomic DNA, chromosome 2, clone: LjT04O04, TM1589.
AP008168.2:11778-11797
CTCTCTCTCTCTCTCTCTCTCTCTCTCCGC11778GTGAATGTTGAACCTGAGTCTTTTCTTCCTTCTCTGTGTTATTTTCTTCT
Lotus japonicus genomic DNA, chromosome 2, clone: LjT33E11, TM0310b.
AP006422.1:5010-5029
CTCTCTCTCTCTCTCTCTCTCTCTCTCCGC5010GTGAATGTTGAACCTGAGTCTTTTCTTCCTTCTCTGTGTTATTTTCTTCT
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:65707705-65707724
CTCTCTCTCTCTCTCTCTCTCTCTCTCCGC65707705GTGAATGTTGAACCTGAGTCTTTTCTTCCTTCTCTGTGTTATTTTCTTCT
Umbilicus rupestris genome assembly, chromosome: 6.
OY787610.1:14638797-14638816
TCCTGATGAGTTTGAAACCTTAAAATGATA14638797GTGAATGTTGAACCTGAGTCCCAATTTCACCTACCAAAAATGAGGAAATC
Rahnella sikkimica strain ERMR1:05 plasmid unnamed2, complete sequence.
CP019064.1:160252-160271
TGGTTAGGTTGATTGTTTAGAATTAACTTA160252GTGAATGTTGAACCTGAGTCAATATATTGGACTCCACATAAACAATCATC
Neorotalia calcar LSU rRNA gene, isolate 262.
AJ228549.2:369-388
ATACACACACCATGCGTCGATACGTAATTC369GTGAATGTTGAACCTGAGTCGAGTTGTTT
Neorotalia calcar LSU rRNA gene, isolate 262.
AJ228550.2:373-392
AGACACACACCACGCGTCGATACGTAATTC373GTGAATGTTGAACCTGAGTCGAGTTGTTT
Pararotalia nipponica LSU rRNA gene, clone 11.
AJ240136.2:389-408
TGCGTTTCATAACCAAACGATACGTAATTC389GTGAATGTTGAACCTGAGTCGAGTTGTTT
Pararotalia sp. voucher NL_1.3 large subunit ribosomal RNA gene, partial sequence.
MG971222.1:410-429
ATTACACGCATTAAAATGTTAACGTAATTC410GTGAATGTTGAACCTGAGTCGAGTTGTTTGGGACTACAGCTCAAATAGTT
T.sp. gene for 28S ribosomal RNA.
Z30147.1:505-524
TATTACAGTTATAAATTATAAACGTAATTC505GTGAATGTTGAACCTGAGTCGAGTTGTTTGGGACTACAGCTCAAATAGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTGAATGTTGAACCTGAGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGAATGTTGAACCTGAGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.106 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=GTGAATGTTGAACCTGAGTC&k=0&no_gap=0&offset=0&limit=50
0.129 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=GACTCAGGTTCAACATTCAC&k=0&no_gap=0&offset=0&limit=39
0.129 | 0.000 | cgi_end;

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