GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-09 01:50:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:1258437-1258457
GTTTTGAGACTTATTGGGTTGTATAACAGA1258437GTGAGAAAGATGACGAAGATGACGGAGAAAGTGGCGAAAGGAGTGCTTTCC
Canna indica chromosome 3.
CP136892.1:73435915-73435935
AGTTTCACATTTGAAGTGGCGCAGGCATGC73435915GTGAGAAAGATGACGAAGATGAGAAGCAGAAAAGCATAGGTGTACGAGGAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_327.
FX698569.1:999-1019
GGAAAGCACTCCTTTCGCCACTTTCTCTGT999CATCTTCGTCATCTTTCTCACTCTTTTAAGACGTCTCAGAGTAGCAGGGCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_7607.
FX731490.1:634-654
GGAAAGCACTCCTTTCGCCACTTTCTCTGT634CATCTTCGTCATCTTTCTCACTCTTTTAAGACGTCTCAGAGTAGCAGGGCT
BOGHY66TF BOGH Brassica oleracea genomic clone BOGHY66, genomic survey sequence.
BH535387.1:425-445
GGAAAGCACTCCTTTCGCCACTTTCTCCGT425CATCTTCGTCATCTTTCTCACTCTGTTATACAACCCAATAAGTCTCAAAAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015D14, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC241201.1:102261-102281
GGAAAGCACTCCTTTCGCCACTTTCTCTGT102261CATCTTCGTCATCTTTCTCACTCTGTTATACAACCCAATAAGTCTCCAAAC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:31412751-31412771
GGAAAGCACTCCTTTCGCCACTTTCTCTGT31412751CATCTTCGTCATCTTTCTCACTCTGTTATACAACCCAATAAGTCTCCAAAC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:31457347-31457367
GGAAAGCACTCCTTTCGCCACTTTCTCTGT31457347CATCTTCGTCATCTTTCTCACTCTGTTATACAACCCAATAAGTCTCCAAAC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:54425679-54425699
GGAAAGCACTCCTTTCGCCACTTTCTCCGT54425679CATCTTCGTCATCTTTCTCACTCTGTTATACAACCCAATAAGTCTCAAAAC
Brassica rapa genome, scaffold: A03.
LR031572.1:31439314-31439334
AGAAAGCACTCCTTTCGCCACTTTCTCTGT31439314CATCTTCGTCATCTTTCTCACTCTGTTATACAACCCAATAAGTCTCCAAAC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:57012708-57012728
GGAAAGCACTCCTTTCGCCACTTTCTCCGT57012708CATCTTCGTCATCTTTCTCACTCTGTTATACAACCCAATAAGTCTCAAAAC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:31500135-31500155
AGAAAGCACTCCTTTCGCCACTTTCTCTGT31500135CATCTTCGTCATCTTTCTCACTCTGTTATACAACCCAATAAGTCTCCAAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTGAGAAAGATGACGAAGATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGAGAAAGATGACGAAGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=GTGAGAAAGATGACGAAGATG&k=0&no_gap=0&offset=0&limit=50
0.171 | 0.059 | search_minus_done; http://172.18.8.135:50400/match?q=CATCTTCGTCATCTTTCTCAC&k=0&no_gap=0&offset=0&limit=48
0.177 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).