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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 21:02:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH046_00124m, 5' end sequence.
AB450722.1:395-417
GTGGAAGCCTTCTTTGGAGAGCATCGTGGA395GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Mdfrs3138K16.g1 Apple_EST_Mdfrs Malus domestica cDNA 5', mRNA sequence.
GO520354.1:167-189
ATGGAAGCCTTCTTTGGGGAGCATCATGGA167GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Pyrus pyrifolia mRNA, clone: NFW1_01_57, 5' end sequence, expressed in flower bud.
HX761213.1:577-599
GTGGAAGCCTTCTTTGGAGAGCATCGTGGA577GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143363.1:23719262-23719284
ATGGAAGCCTTCTTTGGGGAGCATCATGGA23719262GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143380.1:21338882-21338904
GTGGAAGCCTTCTTTGGAGAGCATCATGGA21338882GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Malus sylvestris genome assembly, chromosome: 6.
OU696508.1:23714957-23714979
ATGGAAGCCTTCTTTGGAGAGCATCATGGA23714957GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Malus domestica genome assembly, chromosome: 6.
OU696682.1:24006298-24006320
ATGGAAGCCTTCTTTGGGGAGCATCATGGA24006298GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Malus domestica genome assembly, chromosome: 6.
OU744547.1:23757648-23757670
ATGGAAGCCTTCTTTGGGGAGCATCATGGA23757648GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Malus domestica genome assembly, chromosome: 6.
OU744958.1:23718727-23718749
ATGGAAGCCTTCTTTGGGGAGCATCATGGA23718727GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Malus domestica genome assembly, chromosome: 6.
OU744996.1:19880143-19880165
ATGGAAGCCTTCTTTGGAGAGCATCATGGA19880143GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Malus x robusta genome assembly, chromosome: 14.
OY720338.1:19758938-19758960
ATGGAAGCCTTCTTTGGAGAGCATCATGGA19758938GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTATGAATATTCCAGACTTT
Pyrus communis genome assembly, chromosome: 12.
OY757079.1:17639002-17639024
GTGGAAGCCTTCTTTGGAGAGCATCATGGA17639002GTGCCCTGAAGTAATTGAGATGGAAAGATGAGTCTATGAATATTCCGGACTTT
Dryas octopetala genome assembly, chromosome: 9.
OY992840.1:12783666-12783688
GTGGAAGCCTTCTTTAGAGAGCATTATGGA12783666GTGCCCTGAAGTAATTGAGATGGATAGATGAGTCTCTCAGTCCAAACTTCTTT
Mdfrt3031J23_e8274.g1 Mdfrt Malus domestica cDNA 5', mRNA sequence.
GO559773.1:237-259
AAAGTCTGGAATATTCATAGACTCATCTAT237CCATCTCAATTACTTCAGGGCACTCCATGATGCTCCCCAAAGAAGGCTTCCAT
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141932.1:11617869-11617891
AAAGTCTGGAATATTCATAGACTCATCTAT11617869CCATCTCAATTACTTCAGGGCACTCCATGATGCTCCCCAAAGAAGGCTTCCAT
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141961.1:11028969-11028991
AAAGTCTGGAATATTCATAGACTCATCTAT11028969CCATCTCAATTACTTCAGGGCACTCCATGATGCTCTCCAAAGAAGGCTTCCAC
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141978.1:11008936-11008958
AAAGTCTGGAATATTCATAGACTCATCTAT11008936CCATCTCAATTACTTCAGGGCACTCCATGATGCTCTCCAAAGAAGGCTTCCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTGCCCTGAAGTAATTGAGATGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGCCCTGAAGTAATTGAGATGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.493 | 0.484 | search_plus_done; http://172.18.8.135:50400/match?q=GTGCCCTGAAGTAATTGAGATGG&k=0&no_gap=0&offset=0&limit=50
0.683 | 0.190 | search_minus_done; http://172.18.8.135:50400/match?q=CCATCTCAATTACTTCAGGGCAC&k=0&no_gap=0&offset=0&limit=37
0.686 | 0.003 | cgi_end;

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