GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 12:15:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Camellia sinensis tea_rep_c1295 mRNA sequence.
KA280736.1:981-1000
CGGTGCCAGCAGTGAATAAGTTCAAGAGTA981GTGCCTTGATGTTGGTCGTGTTGAGCTTCTCTTCACCAGGATTTCCCTGC
TSA: Camellia sinensis tea_rep_c4844 mRNA sequence.
KA284260.1:986-1005
CGGTGCCAGCAGTGAATAAGTTCAAGAGTA986GTGCCTTGATGTTGGTCGTGTTGAGCTTCTCTTCACCAGGATTTCCCTGC
TSA: Camellia sinensis tea_s23723 mRNA sequence.
KA302113.1:384-403
CGGTGCCAGCAGTGAATAAGTTCAAGAGTA384GTGCCTTGATGTTGGTCGTGTTGAGCTTCTCTTCACCAGGATTTCCCTGC
Triticum aestivum genome assembly, chromosome: 2A.
LR865461.1:3483826-3483845
TACTAGTTGTCGGTGTGGTTTACTGTGTGT3483826GTGCCTTGATGTTGGTCGTGTGCATCATAGATGTACGGAGGCCGGGTGTG
ZYta234 Young leaves cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA 5', mRNA sequence.
GO255012.1:138-157
GCAGGAAAATCCTGGTGAAGAGAAGCTCAA138CACGACCAACATCAAGGCACTACTCTTGAACTTATTCGCTGCTGGCACCG
ZYta251 Young leaves cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA 5', mRNA sequence.
GO255029.1:138-157
GCAGGAAAATCCTGGTGAAGAGAAGCTCAA138CACGACCAACATCAAGGCACTACTCTTGAACTTATTCGCTGCTGGCACCG
Camellia sinensis flavonoid 3',5'-hydroxylase mRNA, complete cds.
AY945842.1:873-892
GCAGGAAAATCCTGGTGAAGAGAAGCTCAA873CACGACCAACATCAAGGCACTACTCTTGAACTTATTCACTGCTGGCACCG
Camellia sinensis cultivar Shuchazao flavonoid 3',5'-hydroxylase gene, partial cds.
JX898767.1:873-892
GCAGGAAAATCCTGGTGAAGAGAAGCTCAA873CACGACCAACATCAAGGCACTACTCTTGGTATATGCCTCTTTAGCTCTCC
Camellia sinensis cultivar Zhonghuang 2 flavonoid 3',5'-hydroxylase 1 (F3'5'H1) mRNA, complete cds.
KP347677.1:873-892
GCAGGAAAATCCTGGTGAAGAGAAGCTCAA873CACGACCAACATCAAGGCACTACTCTTGAACTTATTCACTGCTGGCACCG
Camellia sinensis var. sinensis cultivar Shuchazao flavonoid 3',5'-hydroxylase (F3'5'H) gene, complete cds.
KX792116.1:2290-2309
GCAGGAAAATCCTGGTGAAGAGAAGCTCAA2290CACGACCAACATCAAGGCACTACTCTTGGTATATGCCTCTTTAGCTCTCC
Camellia sinensis flavonoid 3',5'-hydroxylase (F3'5'Ha) mRNA, complete cds.
KY615696.1:873-892
GCAGGAAAATCCTGGTGAAGAGAAGCTCAA873CACGACCAACATCAAGGCACTACTCTTGAACTTATTCACTGCTGGCACCG
Triticum aestivum genome assembly, chromosome: 2A.
LR862511.1:178129-178148
CACACCCGGCCTCCGTACATCTATGATGCA178129CACGACCAACATCAAGGCACACACACAGTAAACCACACCGACAACTAGTA
Triticum aestivum genome assembly, chromosome: 2A.
LR865742.1:177037-177056
CACACCCGGCCTCCGTACATCTATGATGCA177037CACGACCAACATCAAGGCACACACACAGTAAACCACACCGACAACTAGTA
Triticum aestivum genome assembly, chromosome: 2A.
LR865763.1:176196-176215
CACACCCGGCCTCCGTACATCTATGATGCA176196CACGACCAACATCAAGGCACACACACAGTAAACCACACCGACAACTAGTA
Triticum aestivum genome assembly, chromosome: 2A.
OV100740.1:175271-175290
CACACCCGGCCTCCGTACATCTATGATGCA175271CACGACCAACATCAAGGCACACACACAGTAAACCACACCGACAACTAGTA
Triticum aestivum genome assembly, chromosome: 2D.
OV100742.1:157994-158013
CACACCCGGCCTCCGTACATCTATGATGCA157994CACGACCAACATCAAGGCACACACACAGTAAACCACACCGACAACTAGTA
Triticum aestivum genome assembly, chromosome: 2A.
OW530313.1:175271-175290
CACACCCGGCCTCCGTACATCTATGATGCA175271CACGACCAACATCAAGGCACACACACAGTAAACCACACCGACAACTAGTA
Triticum aestivum genome assembly, chromosome: 2D.
OW530315.1:157994-158013
CACACCCGGCCTCCGTACATCTATGATGCA157994CACGACCAACATCAAGGCACACACACAGTAAACCACACCGACAACTAGTA
Locusta migratoria clone CYPCandidateCYP450-21 CYP450 mRNA, complete cds.
KY852429.1:798-817
GCAGGAAAATCCTGGTGAAGAGAAGCTCAA798CACGACCAACATCAAGGCACTACTCTTGAACTTATTCACTGCTGGCACCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTGCCTTGATGTTGGTCGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGCCTTGATGTTGGTCGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.143 | 0.134 | search_plus_done; http://172.18.8.135:50400/match?q=GTGCCTTGATGTTGGTCGTG&k=0&no_gap=0&offset=0&limit=50
0.400 | 0.257 | search_minus_done; http://172.18.8.135:50400/match?q=CACGACCAACATCAAGGCAC&k=0&no_gap=0&offset=0&limit=46
0.411 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).