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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 10:15:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Drosophila melanogaster 3L BAC RP98-22J22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.
AC010060.10:142358-142377
CATGTGAGCACAATGCCGAACGGCAACAAG142358GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster 3L BAC RP98-1H12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.
AC093497.2:4747-4766
CATGTGAGCACAATGCCGAACGGCAACAAG4747GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster chromosome 3L.
AE014296.5:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster strain sitter (fors) chromosome 3L.
CP023331.1:14892524-14892543
CATGTGAGCACAATGCCGAACGGCAACAAG14892524GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster strain rover (forR) chromosome 3L.
CP023337.1:14892485-14892504
CATGTGAGCACAATGCCGAACGGCAACAAG14892485GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila simulans isolate dsim_28_M0 chromosome 3L.
CP121864.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCAACCGCACCTCGGCCCACCCGCTCT
Drosophila simulans isolate dsim_29_F0 chromosome 3L.
CP121870.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCAACCACACCTCGGCCCACCCGCTCT
Drosophila simulans isolate dsim_29_F0 chromosome 3L.
CP121876.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCACCCGCACCTCGGCCCACCCGCTCT
Drosophila simulans isolate dsim_29_M0 chromosome 3L.
CP121882.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCACCCGCACCTCGACCCACCCGCTCT
Drosophila simulans isolate dsim_31_F0 chromosome 3L.
CP121888.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCACCCGCACCTCGACTCACCCGCTCT
Drosophila simulans isolate dsim_31_F0 chromosome 3L.
CP121894.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCAACCGCACCTCGGCCCACCCGCTCT
Drosophila simulans isolate dsim_31_M0 chromosome 3L.
CP121900.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCACCCGCACCTCGACTCACCCGCTCT
Drosophila simulans isolate dsim_28_M0 chromosome 3L.
CP121906.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCAACCGCACCTCGGCCCACCCGCTCT
Drosophila simulans isolate dsim_29_M0 chromosome 3L.
CP121911.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCACCCGCACCTCGACCCACCCGCTCT
Drosophila simulans isolate dsim_31_M0 chromosome 3L.
CP121916.1:14641727-14641746
CATGTGAGCACAATGCCGAACGGCAACAAG14641727GTGCTGCAGCCTGCACTTTTCCACCACCCGCACCTCGACTCACCCGCTCT
Drosophila melanogaster isolate dmeA_01_F0 chromosome 3L.
CP121921.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCTGCTCT
Drosophila melanogaster isolate dmeA_01_F0 chromosome 3L.
CP121927.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCTGCTCT
Drosophila melanogaster isolate dmeA_01_M0 chromosome 3L.
CP121933.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_05_F0 chromosome 3L.
CP121939.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCACCAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_05_F0 chromosome 3L.
CP121945.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_01_M0 chromosome 3L.
CP121957.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCTGCTCT
Drosophila melanogaster isolate dmeA_15_F0 chromosome 3L.
CP121968.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCTCCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_15_M0 chromosome 3L.
CP121974.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_15_M0 chromosome 3L.
CP121980.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCTCCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_18_F0 chromosome 3L.
CP121986.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_18_F0 chromosome 3L.
CP121997.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_18_M0 chromosome 3L.
CP122009.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_23_F0 chromosome 3L.
CP122015.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_23_F0 chromosome 3L.
CP122021.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_23_M0 chromosome 3L.
CP122027.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_23_M0 chromosome 3L.
CP122033.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_25_F0 chromosome 3L.
CP122039.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGGCCCACCTGCTCT
Drosophila melanogaster isolate dmeA_25_F0 chromosome 3L.
CP122045.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_25_M0 chromosome 3L.
CP122051.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeA_25_M0 chromosome 3L.
CP122057.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_27_F0 chromosome 3L.
CP122063.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_27_F0 chromosome 3L.
CP122069.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_27_M0 chromosome 3L.
CP122075.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_27_M0 chromosome 3L.
CP122081.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_28_F0 chromosome 3L.
CP122087.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_28_F0 chromosome 3L.
CP122093.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_28_M0 chromosome 3L.
CP122099.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_28_M0 chromosome 3L.
CP122105.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_29_F0 chromosome 3L.
CP122111.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_29_F0 chromosome 3L.
CP122117.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_29_M0 chromosome 3L.
CP122123.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_30_F0 chromosome 3L.
CP122129.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_30_F0 chromosome 3L.
CP122135.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_32_F0 chromosome 3L.
CP122147.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTTGTCCCACCCGCTCT
Drosophila melanogaster isolate dmeE_32_F0 chromosome 3L.
CP122153.1:14899433-14899452
CATGTGAGCACAATGCCGAACGGCAACAAG14899433GTGCTGCAGCCTGCACTTTTGCACCACCCGCACCTCGTCCCACCCGCTCT
Mecyna flavalis genome assembly, chromosome: Z.
OX439425.1:10126004-10126023
ATTGCAAGCTTACGTGGTGAGAGGAAATTA10126004GTGCTGCAGCCTGCACTTTTCTGCCGAAGTTAGATTTATGCATGCAGTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTGCTGCAGCCTGCACTTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGCTGCAGCCTGCACTTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=GTGCTGCAGCCTGCACTTTT&k=0&no_gap=0&offset=0&limit=50
0.154 | 0.049 | search_minus_done; http://172.18.8.135:50400/match?q=AAAAGTGCAGGCTGCAGCAC&k=0&no_gap=0&offset=0&limit=0
0.154 | 0.000 | cgi_end;

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