GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 06:02:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia mRNA, clone: NFW2_05_09, 3' end sequence, expressed in flower.
HX743573.1:484-506
GTGGTGGACGAGGCCGAAGGCCCTCAGCCT484GTGGACAGCAGTGACTCCTACAATTTCCCAAACAACATCCACAATTACTACCC
TSA: Pyrus pyrifolia mRNA, contig: contig_3215revcomp.
FX433663.1:1005-1027
GTGGTGGACGAGGCCGAAGGCCCTCAGCCT1005GTGGACAGCAGTGACTCCTACAATTTCCCAAACAACATCCACAATTACTACCC
TSA: Pyrus communis mRNA, contig: lc49304.
FX655504.1:127-149
CAGTGGTGGACGAGGCCGAAGGNTCAGCCT127GTGGACAGCAGTGACTCCTACAANCCCAAACAACATCCACAATTACTACCCTT
TSA: Pyrus x bretschneideri Unigene37525_XinShao mRNA sequence.
JR629733.1:132-154
GTGGTGGACGAGGCCGAAGGCCCTCAGCCT132GTGGACAGCAGTGACTCCTACAATTTCCCAAACAACATCCACAATTACTACCC
Pyrus communis genome assembly, chromosome: 7.
OY757074.1:1778558-1778580
GTGGTGGACGAGGCCGAAGGCCCTCAGCCT1778558GTGGACAGCAGTGACTCCTACAATTTCCCAAACAACATCCACAATTACTACCC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH059_01509m, 5' end sequence.
AB450731.1:375-397
GGGTAGTAATTGTGGATGTTGTTTGGGAAA375TTGTAGGAGTCACTGCTGTCCACAGGCTGAGGGCCTTCGGCCTCGTCCACCAC
Pyrus pyrifolia mRNA, clone: NFW2_05_09, 5' end sequence, expressed in flower bud.
HX762404.1:391-413
GGGTAGTAATTGTGGATGTTGTTTGGGAAA391TTGTAGGAGTCACTGCTGTCCACAGGCTGAGGGCCTTCGGCCTCGTCCACCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTGGACAGCAGTGACTCCTACAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGGACAGCAGTGACTCCTACAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.213 | 0.205 | search_plus_done; http://172.18.8.135:50400/match?q=GTGGACAGCAGTGACTCCTACAA&k=0&no_gap=0&offset=0&limit=50
0.346 | 0.133 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTAGGAGTCACTGCTGTCCAC&k=0&no_gap=0&offset=0&limit=45
0.347 | 0.001 | cgi_end;

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