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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 04:04:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

UM44TD12 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence.
BU880327.1:227-246
AATCTTGGAGAGCTATCATCTGTACGTTTT227GTGGAGCCATTCTCAAATCTTATAGATAAGTTTTGGAGCACATAAATATC
Populus nigra mRNA, clone: PnFL2-050_J22, 5'end.
DB883491.1:218-237
AATCTTGGAGAGCTATCATCTGTACGTTTT218GTGGAGCCATTCTCAAATCTTATAGATAAGTTATGGAGCACAAAAATATC
UM44TD12.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM44TD12 5', mRNA sequence.
DN500983.1:232-251
AATCTTGGAGAGCTATCATCTGTACGTTTT232GTGGAGCCATTCTCAAATCTTATAGATAAGTTTTGGAGCACATAAATATC
PPN049H02-T7 PPN Prunus persica cDNA clone PPN049H02, mRNA sequence.
FC865459.1:231-250
AATCTTGGAAGGCAATCATGTGTACTTTTT231GTGGAGCCATTCTCAAATCTTATAGATGAATTTTGCTGATATATATATTA
Populus trichocarpa clone Pop1-53M5, complete sequence.
AC184078.2:17993-18012
AATCTTGGAGAGCTATCATCTGTACGTTTT17993GTGGAGCCATTCTCAAATCTTATAGATAAGTTTTGGAGCACATAAATATC
Prunus dulcis DNA, pseudomolecule Pd04.
AP019300.1:11535414-11535433
AATCTTGGAAGGCAATCATGTGTACTTTTT11535414GTGGAGCCATTCTCAAATCTTATAGATGAATTTTGCTGACATATATTAAT
Ipomoea trifida cultivar NCNSP0306 chromosome 2.
CP025645.1:12408394-12408413
AGTCTTGGAAGGCCATCGTCTGCACTTTCT12408394GTGGAGCCATTCTCAAATCTTACACATCATAACCTACACTAAATACACAT
Ipomoea triloba cultivar NCNSP0323 chromosome 2.
CP025661.1:7186240-7186259
AGTCTTGGAAGGCCATCGTCTGCACCTTCT7186240GTGGAGCCATTCTCAAATCTTACACATCATAACCTACGCACTAAATATAC
Parietaria judaica genome assembly, chromosome: 7.
OX940866.1:32365135-32365154
GGTCTTGGAAGGCTATAATGTGTACTTTCT32365135GTGGAGCCATTCTCAAATCTTATAGATAATAATCTTCATTTAGTTTATAT
Crataegus laevigata genome assembly, chromosome: 9.
OY756946.1:7783312-7783331
AATCTTGGAAAGCAATCATGTGTACTTTTT7783312GTGGAGCCATTCTCAAATCTTATAGATAAAATTTCTGCAGATATATGTGT
Dryas octopetala genome assembly, chromosome: 1.
OY992832.1:13232760-13232779
AATCTTGGAGGGCTGTTATGTGTACTTTCT13232760GTGGAGCCATTCTCAAATCTTACAGATAATTTCTGCCAATTTGCCTTTCT
UM44TD12.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM44TD12 3', mRNA sequence.
DN490975.1:543-562
GATATTTATGTGCTCCAAAACTTATCTATA543AGATTTGAGAATGGCTCCACAAAACGTACAGATGATAGCTCTCCAAGATT
TSA: Ipomoea batatas Contig_52338.Ipbalsr mRNA sequence.
JP156926.1:151-170
GTGTATTTAGTGTGTAGGTTATGATGTGTA151AGATTTGAGAATGGCTCCACAGAAAGTGCAGACGATGGCCTTCCAAGACT
Ipomoea trifida cultivar NCNSP0306 chromosome 16.
CP025659.1:54031668-54031687
TGATATGATGTGTGTAGGTTATGATGTGTA54031668AGATTTGAGAATGGCTCCACAGAAAGTGCAGACGATGGCCTTCCAAGACT
Populus nigra genome assembly, chromosome: 1.
OX637672.1:6887970-6887989
GATATTTTTGTGCTCCAAAACTTATCTATA6887970AGATTTGAGAATGGCTCCACAAAACGTACAGATGATAGCTCTCCAAGATT
Parietaria judaica genome assembly, chromosome: 13.
OX940872.1:5112060-5112079
AAACTAATTAAATGAAGATGATTATCTATA5112060AGATTTGAGAATGGCTCCACAGAAAGTACACATTATAGCCTTCCAAGACC
Pyrus communis genome assembly, chromosome: 14.
OY757081.1:20098654-20098673
TAACATATATCTGCAGAAATTTTATCTATA20098654AGATTTGAGAATGGCTCCACAAAAAGTACACATGATTGCTTTCCAAGATT
Galeopsis tetrahit genome assembly, chromosome: 2.
OY776120.1:13752712-13752731
TTCTTCTTCTCCTCCTCTATTGAGATCAAG13752712AGATTTGAGAATGGCTCCACACCATCACTTGTACCAGAGAAAGGTACTTC
Galeopsis tetrahit genome assembly, chromosome: 5.
OY776123.1:12057886-12057905
TTCTTCTCCCCCTCCTCTATTGAGATCCAG12057886AGATTTGAGAATGGCTCCACAGCATCACTTGTACCAGAGAAAGGTACTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTGGAGCCATTCTCAAATCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGGAGCCATTCTCAAATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.476 | 0.467 | search_plus_done; http://172.18.8.135:50400/match?q=GTGGAGCCATTCTCAAATCT&k=0&no_gap=0&offset=0&limit=50
0.649 | 0.173 | search_minus_done; http://172.18.8.135:50400/match?q=AGATTTGAGAATGGCTCCAC&k=0&no_gap=0&offset=0&limit=39
0.654 | 0.005 | cgi_end;

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