GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 18:23:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

rhnycca0_0004_B07 Three development stage Cocos nucifera endosperm by Suppression subtractive hybridization (SSH) method Cocos nucifera cDNA, mRNA sequence.
JZ534040.1:150-169
CGAGAAGAGGGAGGACGTACTTGAGCAACT150GTGGCCGCTTCTTCTTGTAGGTTGGGGTAAGCAGATCACGTCCCATGTCA
Elaeis guineensis EST, clone (6lib)_isotig17751.
LM617564.1:33-52
TAATAACCATCTGGTAGTACTTGAGCAACT33GTGGCCGCTTCTTCTTGTAGGTTGGGGTAAGCAGATCACGTTCCATGTCA
TSA: Elaeis guineensis isotig11658.Elguifruit mRNA sequence.
JO098885.1:192-211
TAATAACCATCTGGTAGTACTTGAGCAACT192GTGGCCGCTTCTTCTTGTAGGTTGGGGTAAGCAGATCACGTTCCATGTCA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 4.
CP125976.1:54794168-54794187
CCGCCTGCCTACTTCCTCGCTGACCCTGTT54794168GTGGCCGCTTCTTCTTGTAGGCCGCACCTGAACACGGGAAGGACACTGCG
pOP-CNIP00019_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00019 5', mRNA sequence.
EY404552.1:374-393
TGACATGGAACGTGATCTGCTTACCCCAAC374CTACAAGAAGAAGCGGCCACAGTTGCTCAAGTACTACCAGATGGTTATTA
Darwinula stevensoni.
LR903804.1:21240-21259
CCCGACCAAACATGCGATTCCGATGCCGAC21240CTACAAGAAGAAGCGGCCACGGACCAGGAGCCCCCAAAGCAGATCAACCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTGGCCGCTTCTTCTTGTAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGGCCGCTTCTTCTTGTAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.348 | 0.340 | search_plus_done; http://172.18.8.135:50400/match?q=GTGGCCGCTTCTTCTTGTAG&k=0&no_gap=0&offset=0&limit=50
0.507 | 0.159 | search_minus_done; http://172.18.8.135:50400/match?q=CTACAAGAAGAAGCGGCCAC&k=0&no_gap=0&offset=0&limit=46
0.509 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).