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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 06:36:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 34492 from patent US 9029636.
HK943555.1:567-586
CTGGTCCTCAGCTGCTACTGAAGAAATCAG567GTGGGATACCATGTTCCAGGATCTAAAGCCAAATTGA
Sequence 22752 from Patent EP2761003.
JC636971.1:36-55
TTGGTCTTCAGCTGCTACTGAACAAATCAG36GTGGGATACCATGTTCCAGGATCTAAAGCCAAATTGATGAAAACTTTTCC
Bryobacterales bacterium isolate b6043546-425d-4966-9de7-cf72a436bd97 genome assembly, chromosome: 7.
OY764154.1:344680-344699
AACAGATGGTAACGGAAACCGAGGCCTGGA344680GTGGGATACCATGTTCCAGGCATTTTCTTTGGCTAGAAACCGATGAGGAT
Ljirnpest38-055-b6 Ljirnp Lambda HybriZap two-hybrid library Lotus japonicus cDNA clone LP055-38-b6 5', mRNA sequence.
BG662048.1:154-173
GTATTGGTCAGCTGCTGTTGAAGAAATCAA154GTGGGATACCATGTTCCAGGATCTAAAGCCAAACTAAAATTTCCCCTTTT
MOPAP42TF MOP Vigna unguiculata cDNA 5', mRNA sequence.
FF538579.1:425-444
CTGGTCTTCAGCTGCTGCAGAAGAAATCAG425GTGGGATACCATGTTCCAGGATCTAAAGCCAAATTGATAAATTTTTTTTC
MOPEE87TF MOP Vigna unguiculata cDNA 5', mRNA sequence.
FF552085.1:633-652
ACTGGTCTTCAGCTGCTGCAGAAGAAATCA633GTGGGATACCATGTTCCAGGATCTAAAGCCAAATTGATAAATTTTTTTTC
GLRAQ72TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence.
FK025944.1:578-597
CTATTGGTCTGCTGCTGTTGAAGAGATCAA578GTGGGATACCATGTTCCAGGATCTCAAGC
Aeschynomene afraspera mRNA 5-prime sequence from clone ADL0ACA23YK04 (ADL0ACA23YK04CM1).
LO000800.1:194-213
TTACTGGTCTGCTGCTGTTGAAGAGATAAA194GTGGGATACCATGTTCCAGGATCTAAAACCAAACTGAGAGTTTTACCTTC
Aeschynomene afraspera mRNA 5-prime sequence from clone ADL0ACA23YI04 (ADL0ACA23YI04CM1).
LO000844.1:194-213
TTACTGGTCTGCTGCTGTTGAAGAGATAAA194GTGGGATACCATGTTCCAGGATCTAAAACCAAACTGAGAGTTTTACCTTC
TSA: Cajanus cajan cultivar UPAS 120 contig14512.UPAS mRNA sequence.
EZ632229.1:488-507
ATATTGGACTGCTGCTGTTGAAGAGATCAA488GTGGGATACCATGTTCCAGGATCTAAAGCCAAACTGAAACTTTTCTCTTT
TSA: Cajanus cajan cultivar Asha contig06605.Asha mRNA sequence.
EZ654469.1:47-66
CTGGTCATCAGCTGCTACTGAAGAAATCAG47GTGGGATACCATGTTCCAGGATCTCAAGCCAAATTGATGAAAATTGAAAA
TSA: Cajanus cajan cultivar Asha contig07546.Asha mRNA sequence.
EZ655410.1:466-485
ATATTGGACTGCTGCTGTTGAAGAGATCAA466GTGGGATACCATGTTCCAGGATCTAAAGCCAAACTGAAACTTTTCTCTTT
ICPM1B04 Microsatellite enriched genomic DNA library of pigeonpea Cajanus cajan genomic clone ICPM1B04 5', genomic survey sequence.
FI131367.1:133-152
ATATTGGACTGCTGCTGTTGAAGAGATCAA133GTGGGATACCATGTTCCAGGATCTAAAGCCAAACTGAAACTTTTCTCTTT
CccaBa031-F5TR CccABa Cajanus cajan genomic clone CccaBa031-F5, genomic survey sequence.
FI199123.1:436-455
CTGGTCATCAGCTGCTACTGAAGAAATCAG436GTGGGATACCATGTTCCAGGATCTCAAGCCAAATTGATGAAAATTGAAAA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu10.
CP039352.1:1409955-1409974
CTGGTCTTCAGCTGCTGCAGAAGAAATCAG1409955GTGGGATACCATGTTCCAGGATCTAAAGCCAAATTGATAAATTTTTTTTC
Glycine max cultivar Williams 82 chromosome 8.
CP126433.1:17505559-17505578
TTGGTCTTCAGCTGCTACTGAACAAATCAG17505559GTGGGATACCATGTTCCAGGATCTAAAGCCAAATTGATGAAAACTTTTCC
Glycine max cultivar Williams 82 chromosome 13.
CP126438.1:45741138-45741157
CTATTGGTCTGCTGCTGTTGAAGAGATCAA45741138GTGGGATACCATGTTCCAGGATCTCAAGCCAAACTGAAACTTTTAAATTA
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143366.1:25764574-25764593
TTATTGGTGTACTGGAGTTAAAGAAATGAG25764574GTGGGATACCATGTTCCAGGACTTGAAACCTACTTGAAATCTTATCCTTC
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:24100550-24100569
TTATTGGTGTACTGGAGTTGAAGAAATGAG24100550GTGGGATACCATGTTCCAGGACTTGAAACCTACTTGAAATCTTATCCTTC
Malus sylvestris genome assembly, chromosome: 9.
OU696511.1:25263802-25263821
TTATTGGTGTACTGGAGTTAAAGAAATGAG25263802GTGGGATACCATGTTCCAGGACTTGAAACCTACTTGAAATCTTATCCTTC
Malus domestica genome assembly, chromosome: 9.
OU696685.1:25977691-25977710
TTATTGGTGTACTGGAGTTAAAGAAATGAG25977691GTGGGATACCATGTTCCAGGACTTGAAACCTACTTGAAATCTTATCCTTC
Malus domestica genome assembly, chromosome: 9.
OU744550.1:26159235-26159254
TTATTGGTGTACTGGAGTTAAAGAAATGAG26159235GTGGGATACCATGTTCCAGGACTTGAAACCTACTTGAAATCTTATCCTTC
Malus domestica genome assembly, chromosome: 9.
OU744961.1:25832409-25832428
TTATTGGTGTACTGGAGTTAAAGAAATGAG25832409GTGGGATACCATGTTCCAGGACTTGAAACCTACTTGAAATCTTATCCTTC
Malus domestica genome assembly, chromosome: 9.
OU744999.1:25632328-25632347
TTATTGGTGTACTGGAGTTAAAGAAATGAG25632328GTGGGATACCATGTTCCAGGACTTGAAACCTACTTGAAATCTTATCCTTC
Geum urbanum genome assembly, chromosome: 1.
OX326997.1:30313301-30313320
TTATTGGTCTACCGGATTTGAAGAGATCAA30313301GTGGGATACCATGTTCCAGGACTTGAAACCTACATGAAACTTTGTCCTGT
Geum urbanum genome assembly, chromosome: 4.
OX327000.1:29759373-29759392
TTATTGGTCTACCGGAGTTGAAGAGATCAG29759373GTGGGATACCATGTTCCAGGACTTGAAACCTACATGAAACTTTGTCCTGT
Comarum palustre genome assembly, chromosome: 7.
OX637578.1:11426349-11426368
TTACTGGTCTACCGGAGTTGAAGAGATCAG11426349GTGGGATACCATGTTCCAGGACTTGAAACCTACCTGATGAGGTTTTCTTC
Malus x robusta genome assembly, chromosome: 8.
OY720332.1:25708591-25708610
TTATTGGTGTACTGGAGTTAAAGAAATGAG25708591GTGGGATACCATGTTCCAGGACTTGAAACCTACTTGAAATCTTATCCTTC
Sphenostylis stenocarpa genome assembly, chromosome: 4.
OY731401.1:64815880-64815899
CTGGTCTTCGGCTGCTACAGAAGAAATCAG64815880GTGGGATACCATGTTCCAGGATCTAAAGCCAAATTGATAAAAACTTCTCC
Myrica gale genome assembly, chromosome: 4.
OZ005601.1:7556779-7556798
GTACTGGTTGGCTGGCGTTGAAGAGATCAG7556779GTGGGATACCATGTTCCAGGATTTGAAACCCACATGAATTTTGAGTTTCC
GLRAQ72TR JCVI-SOY3 Glycine max cDNA 5', mRNA sequence.
FK025945.1:385-404
TAATTTAAAAGTTTCAGTTTGGCTTGAGAT385CCTGGAACATGGTATCCCACTTGATCTCTTCAACAGCAGCAGACCAATAG
Mdfw2051M02_e18262.g1 Mdfw Malus domestica cDNA 5' similar to gb|AAN62342.1|AF506028_9 Jp18 [Poncirus trifoliata], mRNA sequence.
GO553261.1:356-375
GAAGGATAAGATTTCAAGTAGGTTTCAAGT356CCTGGAACATGGTATCCCACCTCATTTCTTTAACTCCAGTACACCAATAA
TSA: Cajanus cajan cultivar UPAS 120 contig21719.UPAS mRNA sequence.
EZ639436.1:88-107
TTTTCAATTTTCATCAATTTGGCTTGAGAT88CCTGGAACATGGTATCCCACCTGATTTCTTCAGTAGCAGCTGATGACCAG
TSA: Pyrus x bretschneideri Unigene32186_XinShao mRNA sequence.
JR625008.1:120-139
AAAAGATCAAATTTCAAGTAGGTTTCAAGT120CCTGGAACATGGTATCCCACCTGATCTCTTCAACTCCAGTACACCAATAA
Lotus japonicus B-129 DNA, chromosome 3, complete sequence.
AP022631.1:811805-811824
AAAAGGGGAAATTTTAGTTTGGCTTTAGAT811805CCTGGAACATGGTATCCCACTTGATTTCTTCAACAGCAGCTGACCAATAC
Soybean clone JCVI-FLGm-13D22 unknown mRNA.
BT099404.1:385-404
TAATTTAAAAGTTTCAGTTTGGCTTGAGAT385CCTGGAACATGGTATCCCACTTGATCTCTTCAACAGCAGCAGACCAATAG
Glycine max cultivar Williams 82 chromosome 7.
CP126432.1:2249634-2249653
GGAAAAGTATTCATCAATTTGGCTTTAGAT2249634CCTGGAACATGGTATCCCACCTGATTTCTTCAGTAGCAGCTGAGGACCAG
Malus hybrid cultivar cultivar Flame chromosome 9.
CP141918.1:9957143-9957162
AAGGATAAGATTTTCAAGTTGGTTTCAAGT9957143CCTGGAACATGGTATCCCACCTCATTTCTTTAACTCCAGTACACCAATAA
Malus hybrid cultivar cultivar Flame chromosome 9.
CP141935.1:9876939-9876958
GAAGGATAAGATTTCAAGTAGGTTTCAAGT9876939CCTGGAACATGGTATCCCACCTCATTTCTTTAACTCCAGTACACCAATAA
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141958.1:9987941-9987960
AAGGATAAGATTTTCAAGTAGGTTTCAAGT9987941CCTGGAACATGGTATCCCACCTCATTTCTTTAACTCCAGTACACCAATAA
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141975.1:10236203-10236222
GAAGGATAAGATTTCAAGTAGGTTTCAAGT10236203CCTGGAACATGGTATCCCACCTCATTTCTTTAACTCCAGTACACCAATAA
Rosa rugosa genome assembly, chromosome: 1.
OY288191.1:44593062-44593081
CTAGAACAAAACCTCAGGTAGGTTTCAAGT44593062CCTGGAACATGGTATCCCACCTGATCTCTTCAACTCCGGTAGACCAGTAC
Potentilla sterilis genome assembly, chromosome: 3.
OY821756.1:42274091-42274110
AGAACAAAACCGATCAGGTAGGTTTCAAGT42274091CCTGGAACATGGTATCCCACTTGATCTCTTCAACTCCGGTGGACCAGTAA
Myrica gale genome assembly, chromosome: 2.
OZ005599.1:23138026-23138045
GGGAACTCAAAATTCATGTGGGTTTCAAAT23138026CCTGGAACATGGTATCCCACCTGATCTCTTCAACGCCAGCCAACCAGTAC
Myrica gale genome assembly, chromosome: 18.
OZ005615.1:11065284-11065303
GGGAACTCAAAATTCACGTGGGTTTCAAAT11065284CCTGGAACATGGTATCCCACCTGATCTCTTCAACGCCAGCCAACCAGTAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTGGGATACCATGTTCCAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGGGATACCATGTTCCAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.639 | 0.631 | search_plus_done; http://172.18.8.135:50400/match?q=GTGGGATACCATGTTCCAGG&k=0&no_gap=0&offset=0&limit=50
0.833 | 0.194 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGGAACATGGTATCCCAC&k=0&no_gap=0&offset=0&limit=20
0.843 | 0.010 | cgi_end;

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