GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:17:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdstw6032M09.g1 Apple_EST_Mdstw Malus domestica cDNA 5', mRNA sequence.
GO499246.1:416-435
AAGGGTCCGACGATGGTGAAGCTTCCGTTG416GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
TSA: Pyrus pyrifolia mRNA, contig: contig_28888.
FX403837.1:339-358
AAGGGTCCGACGATGGTGAAGCTTCCGTTG339GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
TSA: Pyrus x bretschneideri Unigene23318_XinShao mRNA sequence.
JR617247.1:393-412
AAGGGTCCGACGATGGTGAAGCTTCCGTTG393GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Petromyzon marinus chromosome UNK clone CH303-4_3D5, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.
AC182743.1:9705-9724
NNNNNAATCGTCTGATGTTCAGCTTGATTC9705GTGGGTTTTCGGAGTATTTGGGTTAGGATTTCAAAGGGTGAGGAGTTTAG
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:18786815-18786834
AAGGGTCCGACGATGGTGAAGCTTCCGTTG18786815GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:18162717-18162736
AAGGGTCCGACGATGGTGAAGCTTCCGTTG18162717GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:17930662-17930681
AAGGGTCCGACGATGGTGAAGCTTCCGTTG17930662GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:18048800-18048819
AAGGGTCCGACGATGGTGAAGCTTCCGTTG18048800GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:18368216-18368235
AAGGGTCCGACGATGGTGAAGCTTCCGTTG18368216GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Malus domestica genome assembly, chromosome: 7.
OU696683.1:17708753-17708772
AAGGGTCCGACGATGGTGAAGCTTCCGTTG17708753GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Malus domestica genome assembly, chromosome: 7.
OU744959.1:17554135-17554154
AAGGGTCCGACGATGGTGAAGCTTCCGTTG17554135GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Malus domestica genome assembly, chromosome: 7.
OU744997.1:17958830-17958849
AAGGGTCCGACGATGGTGAAGCTTCCGTTG17958830GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:20817887-20817906
AAGGGTCCGACGACGGCGAAGCTTCCGTTG20817887GTGGGTTTTCGGAGTATTTGAAAGGAAGGAGGGTAAATGTGGAATCTCAA
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:16383332-16383351
AAGGGTCCGACGATGGTGAAGCTTCCGTTG16383332GTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:18205740-18205759
TTGAGACTCCACATTTACCCTCCTTTCTTT18205740CAAATACTCCGAAAACCCACCAACGGAAGCTTCACCATCGTCGGACCCTT
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:18092825-18092844
TTGAGACTCCACATTTACCCTCCTTTCTTT18092825CAAATACTCCGAAAACCCACCAACGGAAGCTTCACCATCGTCGGACCCTT
Malus domestica genome assembly, chromosome: 7.
OU744548.1:19017741-19017760
TTGAGACTCCACATTTACCCTCCTTTCTTT19017741CAAATACTCCGAAAACCCACCAACGGAAGCTTCACCATCGTCGGACCCTT
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:16680010-16680029
TTGAGACTCCACATTTACCCTCCTTTCTTT16680010CAAATACTCCGAAAACCCACCAACGGAAGCTTCACCATCGTCGGACCCTT
Omphaloscelis lunosa genome assembly, chromosome: 22.
OU744265.1:16490626-16490645
AAACAAACTTTTTTTTGTGTTATTGGATGG16490626CAAATACTCCGAAAACCCACTTGGTAAGATTCAGATTAGCAGTGGTGGCC
Marasmarcha lunaedactyla genome assembly, chromosome: 3.
OV281342.1:31060645-31060664
TGATGGGTTCTCTTTGCATTTGAAGCGATT31060645CAAATACTCCGAAAACCCACCATGCCCCGTCAGTATTTGCGTTGTGATGC
Marasmarcha lunaedactyla genome assembly, chromosome: 15.
OV281354.1:25243260-25243279
TGAAGGGTTCTCTTTGCATCTGAACCTTGC25243260CAAATACTCCGAAAACCCACCATGCCCCGTGAATAGTTGTGTTGTTACCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTGGGTTTTCGGAGTATTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGGGTTTTCGGAGTATTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.186 | 0.177 | search_plus_done; http://172.18.8.135:50400/match?q=GTGGGTTTTCGGAGTATTTG&k=0&no_gap=0&offset=0&limit=50
0.275 | 0.089 | search_minus_done; http://172.18.8.135:50400/match?q=CAAATACTCCGAAAACCCAC&k=0&no_gap=0&offset=0&limit=36
0.279 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).