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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:58:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Dianthus caryophyllus mRNA, clone: CES11_N07, 5' end sequence.
FY386574.1:453-472
AAGAGAGGTGGAGAAGAGAGCCAAGTGGAA453GTGTGTGCAGTTTCAATGGCCACACCAATGATGGGGTCCAGCAGCAGCAA
Dianthus caryophyllus mRNA, clone: CES29O18, 5' end sequence.
FY393383.1:19-38
GCAAATTGAATGGCTTCA19GTGTGTGCAGTTTCAATGGCCACACCAATGATGGGGTCCAGCAGCAGCAA
TSA: Dianthus superbus Ds_CL2895Contig1 mRNA sequence.
JL385322.1:41-60
AAGAGAGGTGGAGAAGAGAGCCAAGTGGAA41GTGTGTGCAGTTTCAATGGCCACACCAATGATGGGGTCCAGCAGCAGCAA
Protocalliphora azurea genome assembly, chromosome: 3.
OW026521.1:100663940-100663959
AAAGTTCTTTTTCATCAAAATAATGCACAG100663940GTGTGTGCAGTTTCAATGGCAAAACTCTATGAATTGGGTTACGAATTGGT
Nowickia ferox genome assembly, chromosome: 3.
OW387025.1:25655802-25655821
GGATTAAAAAGAAAACGATCACATATGGCC25655802GTGTGTGCAGTTTCAATGGCAAAACTCTATAAATTGGGCTACGAATTGGT
Melieria crassipennis genome assembly, chromosome: 2.
OY764962.1:87398396-87398415
GCACGTGTGTGCGTCTGTATGTGAACGTGT87398396GTGTGTGCAGTTTCAATGGCACACCAAGAGCCGAGCAATTTCGGGCCACT
1_Tdi_b3v08.
OA567312.1:65950-65969
ACTTAAAACTCAACAACGGAAAACAAAAAC65950GCCATTGAAACTGCACACACACACAAACACACACACAAACACACACACAC
1_Tps_b3v08.
OD060739.1:1670-1689
ACTTAAAACTCAACAACGGAAAACAAAAAC1670GCCATTGAAACTGCACACACACACACACACACACACACACACACACATAT
Rhingia rostrata genome assembly, chromosome: X.
OX463759.1:18098060-18098079
TACAGTACCCGGTAATACCGGAGTGTCAGA18098060GCCATTGAAACTGCACACACAATTAATCTGTGGACTGGTTCTCCTAGTCC
Tachina grossa genome assembly, chromosome: 1.
OX465274.1:54041818-54041837
ATTGGCTAAATCCGGAGAATATGGAGTTTT54041818GCCATTGAAACTGCACACACAGAGAAAAAACTGCCTTATAGAATCAAGAA
Hydrotaea diabolus genome assembly, chromosome: 2.
OY740717.1:66279444-66279463
AATCGATTGTAACCCAACTCATGCAATTTT66279444GCCATTGAAACTGCACACACGTGTGCATTATCTTGATGAAAAAGAATTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTGTGTGCAGTTTCAATGGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGTGTGCAGTTTCAATGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.316 | 0.307 | search_plus_done; http://172.18.8.135:50400/match?q=GTGTGTGCAGTTTCAATGGC&k=0&no_gap=0&offset=0&limit=50
0.443 | 0.127 | search_minus_done; http://172.18.8.135:50400/match?q=GCCATTGAAACTGCACACAC&k=0&no_gap=0&offset=0&limit=44
0.447 | 0.004 | cgi_end;

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