GGGenome | Results

2025-03-15 17:56:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Glycine max cultivar Williams 82 chromosome 17.
CP126442.1:6179819-6179838

AGAGAGAGTAAAGACTCTGAAGCTTTGTTT6179819GTGTGTTGTGTTCGGATTCGGAGATCACAATTCACTAGAGACGATGACTC

ss64h03.y1 Gm-c1062 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1062-1230 5' similar to TR:Q9ZPR2 Q9ZPR2 F19B11.9 PROTEIN, mRNA sequence.
BE806746.1:49-68

GAGTCATCGTCTCTAGTGAATTGTGATCTC49CGAATCCGAACACAACACACAAACAAAGCTTCAGAGTCTTTACTCTCTCT

sam76e07.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-5222 5' similar to TR:Q9ZPR2 Q9ZPR2 F19B11.9 PROTEIN, mRNA sequence.
BM955066.1:34-53

GAGTCATCGTCTCTAGTGAATTGTGATCTC34CGAATCCGAACACAACACACAAACAAAGCTTCAGAGTCTTTACTCTCTCT

Glycine max cDNA clone: GMFL01-35-D13, 5'end.
BW672794.1:27-46

GATCGTCTCTAGTGAATTGTGATCTC27CGAATCCGAACACAACACACAAACAAAGCTTCAGAGTCTTTACTCTCTCT

Glycine max cDNA clone: GMFL01-46-L07, 5'end.
BW680570.1:15-34

GGAATTGTGATCTC15CGAATCCGAACACAACACACAAACAAAGCTTCAGAGTCTTTACTCTCTCT

Glycine max cDNA, clone: GMFL02-42-H19, 5'end.
DB970227.1:15-34

GGAATTGTGATCTC15CGAATCCGAACACAACACACAAACAAAGCTTCAGAGTCTTTACTCTCTCT

Glycine max cDNA, clone: GMFL02-48-N01, 5'end.
DB972477.1:15-34

GGAATTGTGATCTC15CGAATCCGAACACAACACACAAACAAAGCTTCAGAGTCTTTACTCTCTCT

GLLBH58TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
EV267330.1:19-38

GGAGTGAATTGTGATCTC19CGAATCCGAACACAACACACAAACAAAGCTTCAGAGTCTTTACTCTCTCT

GLLD358TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
FG990323.1:53-72

GAGTCATCGTCTCTAGTGAATTGTGATCTC53CGAATCCGAACACAACACACAAACAAAGCTTCAGAGTCTTTACTCTCTCT

Glycine max cDNA, clone: GMFL01-46-L07.
AK287214.1:15-34

GGAATTGTGATCTC15CGAATCCGAACACAACACACAAACAAAGCTTCAGAGTCTTTACTCTCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
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Debug Info:

0.009 | 0.009 | search_start;
0.147 | 0.138 | search_plus_done; http://172.18.8.135:50400/match?q=GTGTGTTGTGTTCGGATTCG&k=0&no_gap=0&offset=0&limit=50
0.619 | 0.471 | search_minus_done; http://172.18.8.135:50400/match?q=CGAATCCGAACACAACACAC&k=0&no_gap=0&offset=0&limit=49
0.625 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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