GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:23:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Manihot esculenta mRNA, clone: CAS01_002_D16, 5'end.
DB920489.1:187-213
GTCACACTGTCCTTCAACTCCTTTTAGGCG187GTTACTCCGCCGTTGTTGTTGATAATCTTGATAATTCTAACGCTGTTGCTCTCGAAA
CV02027B1B06.f1 CV02-normalized library Manihot esculenta cDNA clone CV02027B1B06.f1, mRNA sequence.
DV458486.1:218-244
GTCACACTGTCCTTCAACTCCTTTTAGGCG218GTTACTCCGCCGTTGTTGTTGATAATCTTGATAATTCTAACGCTGTTGCTCTCGAAA
U_UZ-100602_plate23f06.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG995095.1:170-196
GTCACACTGTCCTTCAACTCCTTTTAGGCG170GTTACTCCGCCGTTGTTGTTGATAATCTTGATAATTCTAACGCTGTTGCTCTCGAAA
Capsella bursa-pastoris isolate WGS_leaf chromosome 6.
CP144188.1:22617879-22617905
GCTGGAGAGAGACGGCGGAGGAATTGTCGA22617879GATTATCAACAACAACGGCGGAGTAACCACCGAGAAGAAGTTGAAGCACCGTGTGAC
Capsella bursa-pastoris isolate WGS_leaf chromosome 14.
CP144196.1:21225716-21225742
GCTGGAGAGAGACGGCGGAGGAATTGTCGA21225716GATTATCAACAACAACGGCGGAGTAACCACCGAGAAGAAGTTGAAGCACCGTGTGAC
Arabis alpina genome assembly, chromosome: 7.
LT669794.1:38514721-38514747
GTTGTAGAGAAACAACGGAGGAATTGTCAT38514721GATTATCAACAACAACGGCGGAGTAACCACCGTTAAGCAGTTGAAGAACAGTATGTG
Draba incana genome assembly, chromosome: 11.
OY755212.1:28356494-28356520
GTTGGAGAGAAACAACGGAGGAATTGTCAT28356494GATTATCAACAACAACGGCGGAGTAACCGCCGTTAAGAAGCTGAAGAACAGTATGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTACTCCGCCGTTGTTGTTGATAATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTACTCCGCCGTTGTTGTTGATAATC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.233 | 1.225 | search_plus_done; http://172.18.8.135:50400/match?q=GTTACTCCGCCGTTGTTGTTGATAATC&k=0&no_gap=0&offset=0&limit=50
1.332 | 0.099 | search_minus_done; http://172.18.8.135:50400/match?q=GATTATCAACAACAACGGCGGAGTAAC&k=0&no_gap=0&offset=0&limit=47
1.335 | 0.003 | cgi_end;

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