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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 15:54:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 25.
OU383800.1:2430577-2430595
AGGGAAAAGAGGATCTGAGTTTTCAAGGGG2430577GTTAGAGGGAGGGGAAACGAGCTGCAGCAAAAGTCTCCAGGGTTGGAAA
Mdfw2050D01_e18102.g1 Mdfw Malus domestica cDNA 5' similar to ref|NP_181647.1| calcium-dependent protein kinase, putative (CDPK) [Arabidopsis thaliana] pir|T02105 calcium-dependent protein kinase (EC
GO552132.1:217-235
TCAAGGAAACGAAAAGCCGCCTTTGTACAA217GTTAGAGGGAGGGGAAACGGAAAGAAAAAATGACACGAGTATGTGCTCC
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:10775859-10775877
TCAAGGAAACGAAAAGCCGCCTTTGTACAA10775859GTTAGAGGGAGGGGAAACGGAAAGAAAAAATGACACGAGTATGTGCTCC
Malus domestica genome assembly, chromosome: 14.
OU744555.1:12374838-12374856
TCAAGGAAACGAAAAGCCGCCTTTGTACAA12374838GTTAGAGGGAGGGGAAACGGAAAGGAAAAATGACACGAGTATGTGCTCC
Malus domestica genome assembly, chromosome: 14.
OU744966.1:12700760-12700778
TCAAGGAAACGAAAAGCCGCCTTTGTACAA12700760GTTAGAGGGAGGGGAAACGGAAAGAAAAAATGACACGAGTATGTGCTCC
Malus domestica genome assembly, chromosome: 14.
OU745004.1:12563083-12563101
TCAAGGAAACGAAAAGCCGCCTTTGTACAA12563083GTTAGAGGGAGGGGAAACGGAAAGGAAAAATGACACGAGTATGTGCTCC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX460046.1:444956768-444956786
ATGAGAGAGGAGTGTGAATAGGGGAGGTGA444956768GTTAGAGGGAGGGGAAACGAATTAACAGGTCCAGCGAGTGCAGTCCGAC
Hordeum vulgare genome assembly, chromosome: 7H.
OX460249.1:440703597-440703615
ATGAGAGAGGAGTGTGAACAGGGGAGGTGA440703597GTTAGAGGGAGGGGAAACGAATTAACAGGTCCAGCGAGTGCAGTCCGAC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX638769.1:444506941-444506959
ATGAGAGAGGAGTGTGAACAGGGGAGGTCA444506941GTTAGAGGGAGGGGAAACGAATTAACAGGTCCAGCGAGTGCAGTCCGAC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX638776.1:440271688-440271706
ATGAGAGAGGAGTTTGAATAGGGGAGGTGA440271688GTTAGAGGGAGGGGAAACGAATTAACAGGTCCAGCGAGTGCAGTCCGAC
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:8891892-8891910
TCAAGGAAACGAAAAGCCACCTTTGTACAA8891892GTTAGAGGGAGGGGAAACGGAAAGAAAAAATGACACGAACATGTGCTGC
Acleris literana genome assembly, chromosome: 17.
OX335685.1:12129872-12129890
ATGTTTTTTGCTTATCTTTGTTTGCGATTA12129872GTTAGAGGGAGGGGAAACGTGTGCCAAAACAAGTAAGACGACGTCAAAA
Sequence 6457 from patent US 10006042.
MI851184.1:2071-2089
GGAGCACATACTCGTGTCATTTTTTCTTTC2071CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Sequence 6457 from patent US 10337023.
MO174351.1:2071-2089
GGAGCACATACTCGTGTCATTTTTTCTTTC2071CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Sequence 6457 from patent US 10774340.
MV708098.1:2071-2089
GGAGCACATACTCGTGTCATTTTTTCTTTC2071CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Sequence 6457 from patent US 11499161.
OO875879.1:2071-2089
GGAGCACATACTCGTGTCATTTTTTCTTTC2071CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Mdfw2017k22.y1 Mdfw Malus domestica cDNA clone Mdfw2017k22 5' similar to TR:O80673 O80673 CPDK-RELATED PROTEIN, mRNA sequence.
CN490635.1:339-357
GGAGCACATACTCGTGTCATTTTTTCTTTC339CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Mdfrt3029d05.y1 Mdfrt Malus domestica cDNA clone Mdfrt3029d05 5', mRNA sequence.
CO068279.1:156-174
GGAGCACATACTCGTGTCATTTTTTCTTTC156CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Mdfrt3107k07.y1 Mdfrt Malus domestica cDNA clone Mdfrt3107k07 5' similar to TR:O80673 O80673 CPDK-RELATED PROTEIN, mRNA sequence.
CV627884.1:339-357
GGAGCACATACTCGTGTCATTTTTTCTTTC339CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Mdfrt3100n12.y1 Mdfrt Malus domestica cDNA clone Mdfrt3100n12 5' similar to TR:O80673 O80673 CPDK-RELATED PROTEIN, mRNA sequence.
CV631876.1:339-357
GGAGCACATACTCGTGTCATTTTTTCTTTC339CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
fl_06D07_BE6 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254927.1:261-279
GGAGCACATACTCGTGTCATTTTTTCTTTC261CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
oy154b06.y1 Woods Hole Squid Stellate Ganglia cDNA Library Doryteuthis pealeii cDNA, mRNA sequence.
JK323981.1:509-527
CTGCTGCTGTCTTGTTGATTCCCCACCCCC509CGTTTCCCCTCCCTCTAACCTCATCTAGTTCTAGATCGGACATTGTAGA
TSA: Pyrus x bretschneideri Unigene33920_XinShao mRNA sequence.
JR626575.1:311-329
GCAGCACATGCTCGTGTCATTTTTTCTTTC311CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGG
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:18945561-18945579
GGAGCACATACTCGTGTCATTTTTTCTTTC18945561CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:19639111-19639129
GGAGCACATACTCGTGTCATTTTTTCTTTC19639111CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:18721495-18721513
GGAGCACATACTCGTGTCATTTTTTCTTTC18721495CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:19782938-19782956
GGAGCACATACTCGTGTCATTTTTTCTTTC19782938CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:13434628-13434646
GGAGCACATACTCGTGTCATTTTTTCTTTC13434628CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:12061929-12061947
GGAGCACATACTCGTGTCATTTTTTCTTTC12061929CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Malus domestica genome assembly, chromosome: 14.
OU696690.1:13278346-13278364
GGAGCACATACTCGTGTCATTTTTTCTTTC13278346CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:19217890-19217908
GGAGCACATACTCGTGTCATTTTTTCTTTC19217890CGTTTCCCCTCCCTCTAACTTGTACAAAGGCGGCTTTTCGTTTCCTTGA
Macrobrachium nipponense isolate FS-2020 chromosome 8.
CP062015.1:60518261-60518279
GAATTATTTACCTTAATAACATGGATTCAT60518261CGTTTCCCCTCCCTCTAACAAACACTGCCCAATACTTTTGTAATCACGT
Apamea sordens genome assembly, chromosome: 7.
OX243992.1:2777017-2777035
GTTTAAAAGCGTACAAAGTGCAGTACTGTA2777017CGTTTCCCCTCCCTCTAACTAAAGTATAATCCCATCTGTATACAGCGCG
Cybosia mesomella genome assembly, chromosome: 18.
OX276406.1:15736062-15736080
TTCGTCTGATCATAGGCACATTCGGTTCAA15736062CGTTTCCCCTCCCTCTAACCTGCCGGAGACTATCACCAGGCCTGCCGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTAGAGGGAGGGGAAACG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTAGAGGGAGGGGAAACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.454 | 0.445 | search_plus_done; http://172.18.8.135:50400/match?q=GTTAGAGGGAGGGGAAACG&k=0&no_gap=0&offset=0&limit=50
1.283 | 0.829 | search_minus_done; http://172.18.8.135:50400/match?q=CGTTTCCCCTCCCTCTAAC&k=0&no_gap=0&offset=0&limit=38
1.298 | 0.015 | cgi_end;

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