GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:57:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WS0044.B21_H04 SS-R-A-5 Picea sitchensis cDNA clone WS0044_H04 3', mRNA sequence.
CO216249.1:363-382
CCCCATATTATTCTGGAGATTTTTAAAGTA363GTTATTGTCGAAGGTATCTGGAGTGCCTGGATCAAGT
WS01026.B21.1_O22 SS-R-N-A-11 Picea sitchensis cDNA clone WS01026_O22 3', mRNA sequence.
CO225241.1:310-329
CCCCATATTATTCTGGAGATTTTTAAAGTA310GTTATTGTCGAAGGTATCTGGAGTGCCC
WS01040.B21.1_C12 SS-R-N-A-11 Picea sitchensis cDNA clone WS01040_C12 3, mRNA sequence.
DR542934.1:316-335
CCCCATATTATTCTGGAGATTTTTAAAGTA316GTTATTGTCGAAGGTATCTGGAGTGCCTGGATCAAGTGACGTTAACGTAT
WS01049.B21_C06 SS-R-N-A-11 Picea sitchensis cDNA clone WS01049_C06 3, mRNA sequence.
DR545385.1:295-314
CCCCATCTTATTCTGGAGATTTATAAAGTA295GTTATTGTCGAAGGTATCTGGAGTGCCTGGATCAAGTGACGTTAACGTAT
GQ0195.TB_D11 GQ019: Clean ROOTS systems - P treatments Picea glauca cDNA clone GQ0195_D11 3', mRNA sequence.
DV984253.2:325-344
CCCCATATTATTCTGGAGATTTTTAAAGTA325GTTATTGTCGAAGGTATCTGGAGTGCCTGGATCAAGTGACGTTAACGTAT
GQ0201.TB_D02 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0201_D02 3', mRNA sequence.
DV985651.2:320-339
CCCCATATTATTCTGGAGATTTTTAAAGTA320GTTATTGTCGAAGGTATCTGGAGTGCCTGGATCAAGTGACGTTAACGTAT
GQ02010.B7_B15 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02010_B15 3', mRNA sequence.
DV987920.2:369-388
CCCCATATTATTCTGGAGATTTTTAAAGTA369GTTATTGTCGAAGGTATCTGGAGTGCCTGGATCAAGTGACGTTAACGTAT
GQ02010.TB_B15 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02010_B15 3', mRNA sequence.
DV988771.2:339-358
CCCCATATTATTCTGGAGATTTTTAAAGTA339GTTATTGTCGAAGGTATCTGGAGTGCCTGGATCAAGTGACGTTAACGTAT
WS0427.C21_J17 SS-NE-27 Picea sitchensis cDNA clone WS0427_J17 3', mRNA sequence.
ES671113.1:573-592
CCCCATCTTATTCTGGAGATTTATAAAGTA573GTTATTGTCGAAGGTATCTGGAGTGCCTGGATCAAGTGACGTTAACGTAT
GQ03214.SP6.r_D04 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03214_D04 3', mRNA sequence.
GO361463.1:406-425
CCCCATATTATTCTGGAGATTTATAAAGTA406GTTATTGTCGAAGGTATCTGGAGTGCCTGGATCAAGTGACGTTAACGTAT
GQ0195.B3_D11 GQ019: Clean ROOTS systems - P treatments Picea glauca cDNA clone GQ0195_D11 5', mRNA sequence.
DV983041.2:519-538
ATACGTTAACGTCACTTGATCCAGGCACTC519CAGATACCTTCGACAATAACTACTTTAAAAATCTCCAGAATAATATGGGG
GQ02771.B3_G10 GQ099: Mixed spruce tissues Picea glauca cDNA clone GenomeQuebec_Id:GQ02771_G10 5', mRNA sequence.
DV994988.1:533-552
ATACGTTAACGTCACTTGATCCAGGCACTC533CAGATACCTTCGACAATAACTACTTTAAAAATCTCCAGAATAATATGGGG
WS03926.C21_L01 SS-B-24 Picea sitchensis cDNA clone WS03926_L01 3', mRNA sequence.
ES665129.1:231-250
ATACGTTAACGTCACTTGATCCAGGCACTC231CAGATACCTTCGACAATAACTACTTTAAAAATCTCCAGAATAATATGGGG
GQ03214.B7_D04 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03214_D04 5', mRNA sequence.
EX368491.1:795-814
ATACGTTAACGTCACTTGATCCAGGCACTC795CAGATACCTTCGACAATAACTACTTTATAAATCTCCAGAATAATATGGGG
Uncultured eukaryote EST, clone AEE0AAA14YJ16CM1.
FR698999.1:59-78
ATACGCTAACGTCACTTGATCCAGGCACTC59CAGATACCTTCGACAATAACTACTTTAAAAATCTCCAGAGTAATATGGGG
GQ02010.B3.r_B15 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02010_B15 5', mRNA sequence.
GE479910.1:533-552
ATACGTTAACGTCACTTGATCCAGGCACTC533CAGATACCTTCGACAATAACTACTTTAAAAATCTCCAGAATAATATGGGG
Picea glauca clone GQ0195_D11 mRNA sequence.
BT102482.1:519-538
ATACGTTAACGTCACTTGATCCAGGCACTC519CAGATACCTTCGACAATAACTACTTTAAAAATCTCCAGAATAATATGGGG
Picea glauca clone GQ03214_D04 mRNA sequence.
BT109954.1:795-814
ATACGTTAACGTCACTTGATCCAGGCACTC795CAGATACCTTCGACAATAACTACTTTATAAATCTCCAGAATAATATGGGG
Stenoptilia bipunctidactyla genome assembly, chromosome: 3.
OX101724.1:13744619-13744638
TTAAGGAGTTCAAAGGAGTTCCAAACTAGT13744619CAGATACCTTCGACAATAACTTGTGAGTAATAAACAATAGTCCACTCCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTATTGTCGAAGGTATCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTATTGTCGAAGGTATCTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.654 | 0.645 | search_plus_done; http://172.18.8.135:50400/match?q=GTTATTGTCGAAGGTATCTG&k=0&no_gap=0&offset=0&limit=50
1.041 | 0.387 | search_minus_done; http://172.18.8.135:50400/match?q=CAGATACCTTCGACAATAAC&k=0&no_gap=0&offset=0&limit=40
1.046 | 0.006 | cgi_end;

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