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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:06:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GR__Ea18D04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea18D04 5', mRNA sequence.
CO095516.1:334-353
AAAATCCATAAAGCGAGGTTGAGGGTGTCC334GTTCAAAGTCGGGTTATTGGCGGATGAATGAGGCATCTGCAGCTGCTGCT
GR__Eb0039N03.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0039N03 5', mRNA sequence.
CO108192.1:331-350
AAAATCCATAAAGCGAGGTTGAGGCTGTCC331GTTCAAAGTCGGGTTATTGGCGGATGAATGAGGCATCTGCAGCTGCTGCT
GH_TMIRS_124_A03_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW508404.1:331-350
AAAATCCATAAAGCGAGGTTGAGGCTGTCC331GTTCAAAGTCGGGTTATTGGTGGATGAATGAGGCATCTGCAGCTGCTGCT
Gossypium herbaceum isolate Zhongcao1 chromosome 3.
CP106685.1:120600771-120600790
AAAATCCATAAAGTGAGGTTGAGGCTGTCC120600771GTTCAAAGTCGGGTTATTGGTGGATGAATGAGGCATCTGCAGCTGCTGCT
Gossypium rotundifolium isolate GPK201 chromosome 3.
CP106724.1:185837911-185837930
AAAATCCATAAAGCGAGGTTGAGGCTGTCC185837911GTTCAAAGTCGGGTTATTGGTGGATGAATGAGGCATATGCAGCTGCAGCT
Gossypioides kirkii chromosome KI_03.
CP032246.1:6458962-6458981
AGCAGCAGCTGCAGATGCCTCAGTTATCCA6458962CCAATAACCCGACTTTGAACGGACAGCCTCAACCTCGCTTTATGGATTTT
Gossypium raimondii isolate D5-4 chromosome D5_03.
CP032555.1:54253593-54253612
AGCAGCAGCTGCAGATGCCTCATTCATCCG54253593CCAATAACCCGACTTTGAACGGACAGCCTCAACCTCGCTTTATGGATTTT
Gossypium bickii isolate GPG1lz chromosome 3.
CP106710.1:15858948-15858967
AGCAGCAGCTGCATATGCCTCATTCATCCA15858948CCAATAACCCGACTTTGAACGGACAGCCTCAACCTCGCTTTATGGATTTT
Gossypium herbaceum clone NBRI_B_2579 simple sequence repeat marker, mRNA sequence.
HQ527219.1:285-304
AGCAGCAGCTGCAGATGCCTCATTCATCCA285CCAATAACCCGACTTTGAACGGACAGCCTCAACCTCACTTTATGGT
Gossypium hirsutum clone NBRI_TRANS-515 microsatellite sequence.
JX964246.1:99-118
AGCAGCAGCTGCAGATGCCTCATTCATCCA99CCAATAACCCGACTTTGAACGGACAGCCTCAACCTCACTTTATGGATTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTCAAAGTCGGGTTATTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTCAAAGTCGGGTTATTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.265 | 0.256 | search_plus_done; http://172.18.8.135:50400/match?q=GTTCAAAGTCGGGTTATTGG&k=0&no_gap=0&offset=0&limit=50
0.366 | 0.102 | search_minus_done; http://172.18.8.135:50400/match?q=CCAATAACCCGACTTTGAAC&k=0&no_gap=0&offset=0&limit=45
0.370 | 0.004 | cgi_end;

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