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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-11 17:06:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

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Thellungiella halophila cDNA clone: RTFL01-03-E17, 3'end sequence.
BY801999.1:331-350
ATTCTTCCTTTTCTCTCTCCACCCTCTCCA331GTTCACGTCTCAGGACTTGCATAAACTGATCAGTTCGGTCCTCTGCGATC
Thellungiella halophila cDNA clone: RTFL01-05-H04, 3'end sequence.
BY803500.1:488-507
ATTCTTCCTTTTCTCTCTCCACCCTCTCCA488GTTCACGTCTCAGGACTTGCATAAACTGATCAGTTCGGTCCTCTGCGATC
Thellungiella halophila cDNA clone: RTFL01-06-N16, 3'end sequence.
BY804440.1:228-247
ATTCTTCCTTTTCTCTCTCCACCCTCTCCA228GTTCACGTCTCAGGACTTGCATAAACTGATCAGTTCGGTCCTCTGCGATC
BNZB_RP_006_G06_22APR2004_036 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE556775.1:362-381
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA362GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGGTCATCTGCGATC
0118510 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113198.1:334-353
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA334GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGGTCTTCTGCGATC
0118669 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113357.1:335-354
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA335GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGGTCTTCTGCGATC
0119059 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113747.1:298-317
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA298GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGGTCATCTGCGATC
0119139 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113827.1:295-314
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA295GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGGTCATCTGCGATC
0121360 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV116048.1:361-380
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA361GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGGTCTTCTGCGATC
0124588 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV119276.1:352-371
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA352GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGGTCTTCTGCGATC
0205607 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV139681.1:527-546
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA527GTTCACGTCTCAGGACTTGCATAAACTGTATATATTCAAAATACAAACTC
0207717 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV141786.1:548-567
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA548GTTCACGTCTCAGGACTTGCATAAACTGTATATATTCAAAATACAAACTC
RR2AT02JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV541575.1:357-376
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA357GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGGTCTTCTGCGATC
BR032134 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-018E10 5', mRNA sequence.
EX047490.1:314-333
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA314GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGATCCTCTGCGATC
BR033290 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-036A09 5', mRNA sequence.
EX048646.1:314-333
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA314GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGATCCTCTGCGATC
BR034642 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-054A03 5', mRNA sequence.
EX049998.1:254-273
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA254GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGATCCTCTGCGATC
BR043554 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-050D02 5', mRNA sequence.
EX058910.1:265-284
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA265GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGATCCTCTGCGATC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7698.
FX696722.1:268-287
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA268GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGATCCTCTGCGATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1551.
FX729981.1:312-331
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA312GTTCACGTCTCAGGACTTGCATAAACTGATCAGTACGATCCTCTGCGATC
Brassica rapa subsp. pekinensis clone KBrB082G02, complete sequence.
CU695270.1:41372-41391
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA41372GTTCACGTCTCAGGACTTGCATAAACTGTATGTATCCAAAACACAAACTC
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:38158938-38158957
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA38158938GTTCACGTCTCAGGACTTGCATAAACTGTATTATCCAAAACACCCAAAAA
Brassica napus genome assembly, chromosome: A05.
HG994359.1:34162683-34162702
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA34162683GTTCACGTCTCAGGACTTGCATAAACTGTATTATCCAAAACACCCAAAAA
Brassica napus genome assembly, chromosome: C05.
HG994369.1:45301384-45301403
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA45301384GTTCACGTCTCAGGACTTGCATAAACTGTATATATTCAAAATACAAACTC
Brassica rapa genome, scaffold: A05.
LR031570.1:39981210-39981229
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA39981210GTTCACGTCTCAGGACTTGCATAAACTGTATACATCCAAAACACAAACTC
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:43906106-43906125
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA43906106GTTCACGTCTCAGGACTTGCATAAACTGTATATATTCAAAATACAAACTC
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:36370769-36370788
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA36370769GTTCACGTCTCAGGACTTGCATAAACTGTATAATCCGAAACAAAAACTCT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:36666489-36666508
ACTCTTCCTTTTCTTTCTCCACCCTCTCTA36666489GTTCACGTCTCAGGACTTGCATAAACTGTATACATCCAAAACACAAACTC
Thlaspi arvense genome assembly, chromosome: 3.
OU466859.2:51019176-51019195
ATTCTTCCTTTTCTTTCTCCACCCTCTCTA51019176GTTCACGTCTCAGGACTTGCATAAACTGAACATACCGAACACACGAAAAA
Draba incana genome assembly, chromosome: 12.
OY755213.1:14800120-14800139
ATTCTTCCTTTTCTTTCTCCACCCTCTCTA14800120GTTCACGTCTCAGGACTTGCAAAAACTGATATTACAAAACACCAACAAAG
Vespa crabro genome assembly, chromosome: 4.
OU342403.1:5585361-5585380
AGGTTGAAAAAGATATTTACGAACGGCGAC5585361GTTCACGTCTCAGGACTTGCAATTAGCGAGAGTCGACCCTCGTATCGTTG
76-E019427-021-010-O02q-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022O0210Q, mRNA sequence.
CX189400.1:648-667
GATCGCAGAGGATCGTACTGATCAGTTTAT648GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAAGAAGAGT
TA466R Thlaspi arvense SSH library Thlaspi arvense cDNA clone TA466, mRNA sequence.
EE720793.1:15-34
ACTGATCAGTTTAT15GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAAT
BNSCS2CT_UP_270_F08_03MAY2007_054 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV035455.1:31-50
GATCGCAGAAGACCGTACTGATCAGTTTAT31GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
BNSCS4CT_UP_102_D10_18MAY2007_074 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV066235.1:380-399
GATCGCAGATGACCGTACTGATCAGTTTAT380GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
0205869 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV139943.1:169-188
GAGTTTGTATTTTGAATATATACAGTTTAT169GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
0208132 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV142201.1:172-191
GAGTTTGTATTTTGAATATATACAGTTTAT172GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
RR2AT02TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV537320.1:549-568
GATCGCAGAAGACCGTACTGATCAGTTTAT549GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
BR076525 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-072E03 5', mRNA sequence.
EX090235.1:42-61
GATCGCAGAGGATCGTACTGATCAGTTTAT42GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
RS2EL19TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY941696.1:446-465
GATCGCAGAAGACCGTACTGATCAGTTTAT446GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
BN18DYSC_UP_118_C02_1APR2008_012 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG562822.1:358-377
GATCGCAGAAGACCGTACTGATCAGTTTAT358GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
TSA: Pachycladon fastigiatum 105436_446_8436_7_41.Pafaleaf mRNA sequence.
JP996771.1:132-151
GATCGCAGAGGACCGTACTGATCAGTTTAT132GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAAT
KBrH118M08 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT010715.1:274-293
TTTTTGGGTGTTTTGGATAATACAGTTTAT274GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
KBrH126C10 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT019708.1:213-232
GAGTTTGTGTTTTGGATACATACAGTTTAT213GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
KBrH032E02F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH032E02, genomic survey sequence.
DX900132.1:195-214
TTTTTGGGTGTTTTGGATAATACAGTTTAT195GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
CAP001N16.F CAP Capsella rubella genomic 5', genomic survey sequence.
KG048216.1:245-264
TTGTTTTGGTGTTTTCTATGTACAGTTTAT245GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAAT
Brassica napus phosphoethanolamine N-methyltransferase mRNA, complete cds.
AY319479.1:1555-1574
GATCGCAGATGACCGTACTGATCAGTTTAT1555GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 3.
CP094633.1:10958234-10958253
TTCTTTTGGTGTTATGTATCTACAGTTTAC10958234GCAAGTCCTGAGACGTGAACTAGAGAGTGTGGAGAAAGAAAAGGAAGAAT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:11106469-11106488
GAGTTTGTATTTTGAATATATACAGTTTAT11106469GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
Camelina sativa cultivar CO46 chromosome 1.
CP131539.1:7491849-7491868
TTCTTTTGGTGCTATGTATCTACAGTTTAC7491849GCAAGTCCTGAGACGTGAACTAGAGAGTGTGGAGAAAGAAAAGGAAGAAT
Camelina sativa cultivar CO46 chromosome 15.
CP131545.1:8761906-8761925
TTCTTTTGGTGTTATGTATCTACAGTTTAC8761906GCAAGTCCTGAGACGTGAACTAGAGAGTGTGGAGAAAGAAAAGGAAGAAT
Capsella bursa-pastoris isolate WGS_leaf chromosome 3.
CP144185.1:5921364-5921383
TTGTTTTGGTGTTTTCTATGTACAGTTTAT5921364GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAAT
Capsella bursa-pastoris isolate WGS_leaf chromosome 11.
CP144193.1:6054267-6054286
TTGTTTTGATGTTATCTGTGTACAGTTTAT6054267GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAAT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:7662181-7662200
AGAGTTTTTGTTTCGGATTATACAGTTTAT7662181GCAAGTCCTGAGACGTGAACTAGAGAGGGTGGAGAAAGAAAAGGAAGAGT
Lepidium didymum genome assembly, chromosome: 11.
OY986983.1:12693226-12693245
TTGTGGTGTTTTGTAATAATTACAGTTTAC12693226GCAAGTCCTGAGACGTGAACTAGAGACGGTCGAAAAAGAAAAGGAAGAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTCACGTCTCAGGACTTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTCACGTCTCAGGACTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.428 | 1.419 | search_plus_done; http://172.18.8.135:50400/match?q=GTTCACGTCTCAGGACTTGC&k=0&no_gap=0&offset=0&limit=50
2.411 | 0.983 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAGTCCTGAGACGTGAAC&k=0&no_gap=0&offset=0&limit=20
2.426 | 0.015 | cgi_end;

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