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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 07:23:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 30434 from Patent WO2008034648.
FB811161.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 66743 from Patent WO2008034648.
FB847470.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 85165 from Patent WO2008034648.
FB865892.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 104183 from Patent WO2008034648.
FB884910.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 119595 from Patent WO2008034648.
FB900322.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 122287 from Patent WO2008034648.
FB903014.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 128547 from Patent WO2008034648.
FB909274.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 129927 from Patent WO2008034648.
FB910654.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 137112 from Patent WO2008034648.
FB917839.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 142946 from Patent WO2008034648.
FB923673.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 29616 from patent US 7569389.
GP683399.1:1920-1941
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1920GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 30434 from Patent EP2090662.
HB681220.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 66743 from Patent EP2090662.
HB717529.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 85165 from Patent EP2090662.
HB735951.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 104183 from Patent EP2090662.
HB754969.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 119595 from Patent EP2090662.
HB770381.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 122287 from Patent EP2090662.
HB773073.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 128547 from Patent EP2090662.
HB779333.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 129927 from Patent EP2090662.
HB780713.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 137112 from Patent EP2090662.
HB787898.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 142946 from Patent EP2090662.
HB793732.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
Sequence 187247 from Patent EP2090662.
HB838033.1:1923-1944
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1923GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
RR3AL23TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV549453.1:440-461
CCCTGTCCCGGTTGTTCCTCAAGAAGAGAG440GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGATGCATT
RS2BU72TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX895431.1:132-153
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG132GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGATGCATT
RS1DW03TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY932312.1:101-122
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG101GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACTATATGTTCAGATGCATT
RR1H116TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD965394.1:161-182
CCCTGTCCCGGTTGTTCCTCAAGAAGAGAG161GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATC
BN18DYSC_UP_027_G12_18FEB2008_084 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG555270.1:48-69
CCCTGTCCCGGTTGTTCCTCAAGAAGAGAG48GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGATGCATC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12137.
FX660976.1:1938-1959
CCCTGTCCCGGTTGTTCCTCAAGAAGAGAG1938GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2808.
FX698365.1:2162-2183
CCCTGTCCCGGTTGTTCCTCAGGAAGAGAG2162GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_18296.
FX726899.1:2051-2072
CCCTGTCCCGGTTGTTCCTCAAGAAGAGAG2051GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATC
SALK_121784.45.00.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_121784.45.00.x, genomic survey sequence.
BZ291780.1:85-106
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG85GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
SALK_083613.47.35.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_083613.47.35.x, genomic survey sequence.
BZ761943.1:113-134
TCCTGTCCCGGTTGTTCCTCAAGAAGAGAG113GTTCCTCTTCAGACGGGTTTGTCCTAAGGACTACCATATGTTCAGGTGCATT
KBrB015G09F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB015G09, genomic survey sequence.
DX021590.1:335-356
CCCTGTCCCGGTTGTTCCTCAGGAAGAGAG335GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATC
KBrB101F06F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB101F06, genomic survey sequence.
ED516296.1:343-364
CCCTGTCCCGGTTGTTCCTCAGGAAGAGAG343GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATC
SIR-13F18TF Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-13F18, genomic survey sequence.
FI791056.1:787-808
CCCTGTCCCGGTCGTCCCTCAAGAAGAAAG787GTTCCTCTTCAGACGGGTTTGTCCCAAGGACTACCATATGTTCAGGTGCATC
Brassica rapa genome, scaffold: A01.
LR031571.1:24849429-24849450
CCCTGTCCCGGTTGTTCCTCAAGAAGAGAG24849429GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:8850664-8850685
CCCTGTCCCGGTTGTTCCTCAAGAAGAGAG8850664GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATC
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:25368978-25368999
CCCTGTCCCGGTTGTTCCTCAAGAAGAGAG25368978GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATC
Olimarabidopsis pumila KUP12.1 mRNA, complete cds.
MW858139.1:1842-1863
TCCTGTCCCAGTTGTTCCTCAAGAAGAGAG1842GTTCCTCTTCAGACGGGTTTGTCCTAGAGACTACCATATATTCAGGTGCATT
Olimarabidopsis pumila KUP12.2 mRNA, complete cds.
MW858140.1:972-993
TCCTGTCCCAGTCGTTCCTCAAGAAGAGAG972GTTCCTCTTCAGACGGGTTTGTCCTAGAGACTACCATATGTTCAGGTGCATT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:8850664-8850685
CCCTGTCCCGGTTGTTCCTCAAGAAGAGAG8850664GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGATGCATC
Lepidium didymum genome assembly, chromosome: 15.
OY986987.1:1803422-1803443
TCCTGTCCCAGTCGTTCCTCAAGAAGAGAG1803422GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGGTGCATA
Cardamine chenopodiifolia genome assembly, chromosome: 2.
OZ000460.1:1625533-1625554
TCCTATCCCGGTCGTTCCGCAAGAAGAGAG1625533GTTCCTCTTCAGACGGGTTTGTCCAAAGGACTACCAAATGTTCAGATGTATC
Cardamine chenopodiifolia genome assembly, chromosome: 26.
OZ000484.1:2063829-2063850
TCCTGTCCCGGTCGTCCCTCAAGAGGAGAG2063829GTTCCTCTTCAGACGGGTTTGTCCTAAAGACTACCATATGTTCAGGTGTATT
RS2DQ44TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY939020.1:250-271
GATACATCTGAACATATGGTAGTCTTTAGG250ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8684.
FX726458.1:700-721
GATGCATCTGAACATATGGTAGTCTTTAGG700ACAAACCCGTCTGAAGAGGAACCTCTCTTCCTGAGGAACAACCGGGACAGGG
TSA: Raphanus sativus RS10590 mRNA sequence.
JT795137.1:839-860
AATGCATCTGAACATATGGTAGTCTTTAGG839ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
KBrH092D14F Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH092D14, genomic survey sequence.
DU116809.1:435-456
GATGCATCTGAACATATGGTAGTCTTTAGG435ACAAACCCGTCTGAAGAGGAACCTCTCTTCCTGAGGAACAACCGGGACAGGG
SIL-033A23TV Sisymbrium irio BAC library SIL Sisymbrium irio genomic clone SIL-033A23, genomic survey sequence.
JJ763910.1:346-367
TATGCACCTGAACATATGGTAGTCTTTAGG346ACAAACCCGTCTGAAGAGGAACCTTTCTTCTTGAGGAACGACCGGGACAGGG
SIL-023C16TR Sisymbrium irio BAC library SIL Sisymbrium irio genomic clone SIL-023C16, genomic survey sequence.
JJ769691.1:425-446
TATGCACCTGAACATATGGTAGTCTTTAGG425ACAAACCCGTCTGAAGAGGAACCTTTCTTCTTGAGGAACGACCGGGACAGGG
Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.
AC004473.1:28837-28858
AATGCACCTGAACATATGGTAGTCCTTAGG28837ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genomic region affecting the accumulation of flavonol 3-O-gentiobioside 7-O-rhamnoside, ecotype Landsberg erecta.
AM748036.1:79014-79035
AATGCACCTGAACATATGGTAGTCCTTAGG79014ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana chromosome 1 sequence.
CP002684.1:22188870-22188891
AATGCACCTGAACATATGGTAGTCCTTAGG22188870ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana ecotype 9470 chromosome 1 sequence.
CP086729.1:23019434-23019455
AATGCACCTGAACATATGGTAGTCCTTAGG23019434ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana ecotype 9412 chromosome 1 sequence.
CP086734.1:22001265-22001286
AATGCACCTGAACATATGGTAGTCCTTAGG22001265ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana ecotype 6024 chromosome 1 sequence.
CP086739.1:22496888-22496909
AATGCACCTGAACATATGGTAGTCCTTAGG22496888ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
LR881466.1:22795129-22795150
AATGCACCTGAACATATGGTAGTCCTTAGG22795129ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis arenosa genome assembly, chromosome: 2.
LR999452.1:3344773-3344794
GATGCACCGGAACATATGGTAGTCCTTAGG3344773ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGAACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OW119596.1:24909266-24909287
AATGCACCTGAACATATGGTAGTCCTTAGG24909266ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX291429.1:23809084-23809105
AATGCACCTGAACATATGGTAGTCCTTAGG23809084ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX291436.1:24091001-24091022
AATGCACCTGAACATATGGTAGTCCTTAGG24091001ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX291450.1:23540490-23540511
AATGCACCTGAACATATGGTAGTCCTTAGG23540490ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX291455.1:24751390-24751411
AATGCACCTGAACATATGGTAGTCCTTAGG24751390ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX291460.1:25264514-25264535
AATGCACCTGAACATATGGTAGTCCTTAGG25264514ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX461135.1:25361113-25361134
AATGCACCTGAACATATGGTAGTCCTTAGG25361113ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX461140.1:24485610-24485631
AATGCACCTGAACATATGGTAGTCCTTAGG24485610ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX461145.1:26339406-26339427
AATGCACCTGAACATATGGTAGTCCTTAGG26339406ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX461150.1:25698791-25698812
AATGCACCTGAACATATGGTAGTCCTTAGG25698791ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX461155.1:25318628-25318649
AATGCACCTGAACATATGGTAGTCCTTAGG25318628ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Arabidopsis thaliana genome assembly, chromosome: 1.
OX461160.1:26379992-26380013
AATGCACCTGAACATATGGTAGTCCTTAGG26379992ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACAACCGGGACAGGA
Lepidium didymum genome assembly, chromosome: 12.
OY986984.1:16483585-16483606
TATGCACCTGAACATATGGTAGTCTTTAGG16483585ACAAACCCGTCTGAAGAGGAACCTCTCTTCTTGAGGAACGACTGGGACAGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTCCTCTTCAGACGGGTTTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTCCTCTTCAGACGGGTTTGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.893 | 0.884 | search_plus_done; http://172.18.8.135:50400/match?q=GTTCCTCTTCAGACGGGTTTGT&k=0&no_gap=0&offset=0&limit=50
1.149 | 0.256 | search_minus_done; http://172.18.8.135:50400/match?q=ACAAACCCGTCTGAAGAGGAAC&k=0&no_gap=0&offset=0&limit=6
1.166 | 0.017 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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